Ca 2þ is a universal second messenger in eukaryotic cells transmitting information through sequences of concentration spikes. A prominent mechanism to generate these spikes involves Ca 2þ release from the endoplasmic reticulum Ca 2þ store via inositol 1,4,5-trisphosphate (IP 3 )-sensitive channels. Puffs are elemental events of IP 3 -induced Ca 2þ release through single clusters of channels. Intracellular Ca 2þ dynamics are a stochastic system, but a complete stochastic theory has not been developed yet. We formulate the theory in terms of interpuff interval and puff duration distributions because, unlike the properties of individual channels, they can be measured in vivo. Our theory reproduces the typical spectrum of Ca 2þ signals like puffs, spiking, and bursting in analytically treatable test cases as well as in more realistic simulations. We find conditions for spiking and calculate interspike interval (ISI) distributions. Signal form, average ISI and ISI distributions depend sensitively on the details of cluster properties and their spatial arrangement. In contrast to that, the relation between the average and the standard deviation of ISIs does not depend on cluster properties and cluster arrangement and is robust with respect to cell variability. It is controlled by the global feedback processes in the Ca 2þ signaling pathway (e.g., via IP 3 -3-kinase or endoplasmic reticulum depletion). That relation is essential for pathway function because it ensures frequency encoding despite the randomness of ISIs and determines the maximal spike train information content. Hence, we find a division of tasks between global feedbacks and local cluster properties that guarantees robustness of function while maintaining sensitivity of control of the average ISI. mathematical modeling | stochastic processes | systems biology | noisy signaling T he calcium ion Ca 2þ is an important second messenger that transmits information from the plasma membrane to cytosolic targets in eukaryotic cells. Most Ca 2þ signals appear as repeated short-lived increases in the cytosolic Ca 2þ concentration, [Ca 2þ ], referred to as Ca 2þ spikes. An important class of Ca 2þ signals requires binding of inositol 1,4,5-trisphosphate (IP 3 ) to its receptor (IP 3 R), which acts as a channel that releases Ca 2þ from the endoplasmic reticulum into the cytosol. The open probability of the IP 3 R increases with a moderate rise of the cytosolic [Ca 2þ ] [Ca 2þ -induced Ca 2þ release (CICR)] (1-4). IP 3 Rs involved in Ca 2þ signaling exist in clusters. Recent experiments indicate that IP 3 can induce clustering of IP 3 Rs and that in most cases a cluster consists of 4 to 10 IP 3 Rs (5, 6). Fluorescence imaging studies and model simulations reveal a cascade of events leading to a Ca 2þ spike: Openings of single Ca 2þ channels (blips) are followed by collective openings of channels in a cluster (puffs). Ca 2þ from a puff diffusing to neighboring clusters can activate them by CICR, eventually leading to a global Ca 2þ spike (7-10). Channels within a cluste...