Currently known fungal a-amylases are well-characterized extracellular enzymes that are classified into glycoside hydrolase subfamily GH13_1. This study describes the identification, and phylogenetic and biochemical analysis of novel intracellular fungal a-amylases. The phylogenetic analysis shows that they cluster in the recently identified subfamily GH13_5 and display very low similarity to fungal a-amylases of family GH13_1. Homologues of these intracellular enzymes are present in the genome sequences of all filamentous fungi studied, including ascomycetes and basidiomycetes. One of the enzymes belonging to this new group, Amy1p from Histoplasma capsulatum, has recently been functionally linked to the formation of cell wall a-glucan. To study the biochemical characteristics of this novel cluster of a-amylases, we overexpressed and purified a homologue from Aspergillus niger, AmyD, and studied its activity product profile with starch and related substrates. AmyD has a relatively low hydrolysing activity on starch (2.2 U mg "1 ), producing mainly maltotriose. A possible function of these enzymes in relation to cell wall a-glucan synthesis is discussed.
INTRODUCTIONa-Amylases are widely occurring enzymes which hydrolyse the a-(1,4)-glycosidic bonds in starch and glycogen, producing short maltooligosaccharides and maltose. Based on sequence similarity, most a-amylases (EC 3.2.1.1) are classified in glycoside hydrolase (GH) family 13, although some a-amylases originating from extremophilic organisms belong to family GH57 (Henrissat, 1991;Henrissat & Bairoch, 1996) (see also the CAZy website, http://www.cazy.org). Based on a phylogenetic analysis of 1691 different members of the GH13 family, the family has recently been divided into 35 subfamilies, all acting on aglycosidic bonds (Stam et al., 2006). Several of these subfamilies display a-amylase specificity, but many other enzyme reaction specificities are also represented. The tertiary structure of these enzymes is characterized by a (b/a) 8 barrel containing four highly conserved amino acid regions that form the active site (MacGregor et al., 2001), but the overall sequence similarity can be as low as 10 % and only a catalytic triad of amino acids is conserved invariantly (Machovic & Janecek, 2003). The shared (b/a) 8 barrel structure and catalytic mechanism within GH13 enzymes are believed to represent a common evolutionary origin (Kuriki & Imanaka, 1999;Janecek, 1997). The presence of the four conserved regions and a common secondary and tertiary structure allow construction of alignments and phylogenetic studies within the family. The phylogeny of a-amylases is generally in agreement with their origin, e.g. all fungal a-amylases are more related to each other than to the a-amylases originating from plants or animals. a-Amylases from bacteria, however, are scattered over several clusters, which group with animal, plant or fungal a-amylases, or form a separate branch (Janecek, 1994).Several a-amylases from yeasts and fungi have been studied previously (see e.g....