Ears are a particularly difficult region of the human face to model, not only due to the nonrigid deformations existing between shapes but also to the challenges in processing the retrieved data. The first step towards obtaining a good model is to have complete scans in correspondence, but these usually present a higher amount of occlusions, noise and outliers when compared to most face regions, thus requiring a specific procedure. Therefore, we propose a complete pipeline taking as input unordered 3D point clouds with the aforementioned problems, and producing as output a dataset in correspondence, with completion of the missing data. We provide a comparison of several state-of-the-art registration and shape completion methods, concluding on the best choice for each of the steps.