BackgroundThe effect of carbon monoxide (CO) poisoning on the topology of brain functional networks is unclear, especially in children whose brains are still developing.PurposeTo investigate the topological alterations of the whole‐brain functional connectome in children with CO poisoning and characterize its relationship with disease severity.Study TypeCross‐sectional and prospective study.SubjectsA total of 26 patients with CO poisoning and 26 healthy controls.Field Strength/SequenceA 3.0 T MRI system/echo planar imaging (EPI) and 3D brain volume imaging (BRAVO) sequences.AssessmentWe used the network‐based statistics (NBS) method to explore between‐group differences in functional connectivity strength and a graph‐theoretical‐based analytic method to explore the topology of brain networks.Statistical TestsStudent's t‐test, chi‐square test, NBS, Pearson correlation coefficient, and false discovery rate correction. The statistical significance threshold was set at P < 0.05.ResultsThe case group's brain functional network topology was impaired in comparison to the control group (reduced global efficiency and small‐worldness, increased characteristic path length). According to node and edge analyses, the case group showed topologically damaged regions in the frontal lobe and basal ganglia, as well as neuronal circuits with weaker connections. Also, there was a significant correlation between the patients' coma time and the degree (r = −0.4564), efficiency (r = −0.4625), and characteristic path length (r = 0.4383) of the nodes in the left orbital inferior frontal gyrus. Carbon monoxide hemoglobin content (COHb) concentration and right rolandic operculum node characteristic path length (r = −0.3894) were significantly correlated. The node efficiency and node degree of the right middle frontal gyrus (r = 0.4447 and 0.4539) and right pallidum (r = 0.4136 and 0.4501) significantly correlated with the MMSE score.Data ConclusionThe brain network topology of CO poisoned children is damaged, which is manifested by reduced network integration and may lead to a series of clinical symptoms in patients.Evidence Level2.Technical EfficacyStage 2.