Topoisomerase II is a multifunctional protein required during DNA replication, chromosome disjunction at mitosis, and other DNA-related activities by virtue of its ability to alter DNA supercoiling. The enzyme is encoded by two similar but nonidentical genes: the topoisomerase II␣ and II genes. In HeLa cells synchronized by mitotic shake-off, topoisomerase II␣ mRNA levels were found to vary as a function of cell cycle position, being 15-fold higher in late S phase (14 to 18 h postmitosis) than during G 1 phase. Also detected was a corresponding increase in topoisomerase II␣ protein synthesis at 14 to 18 h postmitosis which resulted in significantly higher accumulation of the protein during S and G 2 phases. Topoisomerase II␣ expression was not dependent on DNA synthesis during S phase, which could be inhibited without effect on the timing or level of mRNA expression. Mechanistically, topoisomerase II␣ expression appears to be coupled to cell cycle position mainly through associated changes in mRNA stability. When cells are in S phase and mRNA levels are maximal, a half-life of greater than 4 h was observed. However, during G 1 phase, when cellular levels are lowest, the half-life of topoisomerase II␣ mRNA was determined to be approximately 30 min. A similar decrease in mRNA stability was also induced by two external factors known to delay cell cycle progression. Treatment of S-phase cells, at the time of maximum topoisomerase II␣ mRNA stability, with either ionizing radiation (5 Gy) or heat shock (45؇C for 15 min) caused the accumulated topoisomerase II␣ mRNA to decay. This finding suggests a potential relationship between stress-induced decreases in topoisomerase II␣ expression and cell cycle progression delays in late S/G 2 .The double-stranded nature of the DNA molecule presents special problems during chromosomal replication and segregation. Movement of the replication fork along the DNA molecule generates positive supercoiling in advance while the replicated parental strands in its wake are negatively supercoiled. Topological problems also arise near the end of replication when adjacent replication forks converge. Depending on the relative unwinding rate of the parental or progeny strands, either an intertwined or a gapped structure is formed (47). Unless untangled, the former structure leads to chromosome breakage, nondisjunction, and cell death (20). DNA topology in the cell is controlled through the action of two types of topoisomerase enzymes (see references 20 and 46 for reviews). Type I topoisomerases introduce into the duplex DNA molecule transient single-strand nicks which act as swivels during DNA replication or relieve the torsional stress associated with RNA transcription. Topoisomerase II enzymes relax, catenate, or decatenate DNA by introducing transient double-strand breaks which allow another DNA segment to pass through. While topoisomerase II is also capable, in theory, of relaxing transcription and replication induced supercoiling, it appears that topoisomerase I is mainly responsible for ...