In this work, an efficient and new Fe3O4@APTES@isatin-SO3Hwas synthesized through immobilization of isatin sulfonic acid on silica modified Fe3O4 nanoparticles. The synthesizedFe3O4@APTES@isatin-SO3Hmagnetic nanoparticles (MNPs) were characterized using the energy dispersive X-ray spectroscopy (EDX), Fourier transform infrared spectroscopy (FT-IR), scanning electron microscopy (SEM), transmission electron microscopy (TEM), vibrating sample magnetometer (VSM), X-ray diffraction (XRD), and thermogravimetric(TGA) analysis. The Fe3O4@APTES@isatin-SO3HMNPs performed efficient catalytic activity as a magnetically recyclable heterogeneous catalyst for one-pot, condensation reaction of 1,2-dicarbonyl compounds and o-phenylen diamines in ethanol at room temperature to afford quinoxaline derivatives.