Previous studies both invivo and in vitro have revealed that high levels of fluoride cause neurotoxicity. Mangiferin has been reported to possess antioxidant, antiapoptotic, and anti‐inflammatory properties. The present study was designed to characterize the mechanisms by which mangiferin protects against NaF‐induced neurotoxicity. Increased levels of proapoptotic Bax, Caspase‐3, Caspase‐9, and cleaved‐caspase 3, as well as a decreased level of antiapoptotic Bcl‐2 induced by fluoride in human neuroblastoma SH‐SY5Y cells, these effects were prevented by pretreatment of mangiferin. In addition, mangiferin attenuated the enhancement of p‐JNK, reductions of Nrf2 and HO‐1, and increased level of the mitochondrial fission proteins Drp1 caused by fluoride. Moreover, oxidative stress, as reflected in the levels of reactive oxygen species, 8‐hydroxy‐2'‐deoxyguanosine, and 4‐hydroxynonenal, was elevated by fluoride and these effects were again ameliorated by mangiferin. In conclusion, protection by mangiferin against fluoride‐induced neurotoxicity involves normalizing the impaired mitochondrial apoptotic pathway and dynamics and reducing oxidative stress via inactivation of the JNK and activation of the Nrf2/HO‐1 pathways.