In this paper, we introduce the concept of cyber-physical intersection systems (CPIS) which interconnects roadside units (RSU) located at the intersection, on-board units (OBU) of moving vehicles, and the smartphone apps, named the Smartphone Agent (SA). At the pedestrian mode of the SA, the connectivity management schemes, such as a location update and a handover control algorithm, are proposed to better support the CPIS services while minimizing the power consumption of the pedestrian's smartphone. We develop a real prototype of the CPIS, including RSU, OBU, and the SA. Based on the numerical results collected from a pedestrian moving around the Pusan National University campus, we validate that the proposed connectivity management schemes can improve not only the power efficiency of the pedestrian's smartphone, but also the quality of the CPIS services.