Regeneration patterns in relation to canopy species composition and site variables were analyzed in mixed oak forests of the Sierra de Manantlán in western Mexico with the aim of establishing an ecological basis for the design of management alternatives. Using ordination (canonical correspondence analysis) and classification (two‐way indicator species analysis) methods, five different canopy types and three different seedling associations were revealed according to species composition, all of them dominated by one or more oak species. Red–far red ratio, slope, altitude, topography, canopy type and grazing intensity were the main variables that explained differences in species composition among the seedling associations. Oak seedlings were relatively scarce in the sampling plots, with the lowest frequency values of all species recorded except for those of Quercus crassipes Humb. & Bonpl., and also the lowest density values. The presence of a particular oak seedling species was strongly associated with a particular percentage of canopy openness; Quercus candicans Née, Quercus laurina Humb. & Bonpl. and Quercus rugosa Née were present in the plots with the least‐open canopy (6.4%, 2.9 and 6.2%, respectively), while Quercus castanea Née and Quercus crassipes Humb. & Bonpl. were present in the plots with the most‐open canopy (13 and 8.1%, respectively). Every oak seedling species was more frequent, although not dependent, on the canopy type where the same oak species dominated. Because of the great heterogeneity in species composition and the physiographical factors of mixed oak forests in the Sierra de Manantlán, we concluded that management alternatives must be prescribed for each ecological situation where the different oak species are growing.