Allele frequencies of markers LDLR, GYPA, D7S8, HBGG, GC, HLA-DQA1 and D1S80 in the general and minority populations of Costa Rica

Morales, Ana Isabel; Morera-Brenes, Bernal; Jiménez-Arce, Gerardo; Sánchez-Rivera, Gerardo; Calafell, Francesc; Barrantes, Ramiro

doi:10.1016/s0379-0738(01)00561-8

Cited by 8 publications

(4 citation statements)

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“…Previous studies in Costa Rica have addressed the admixture question, directly or indirectly, through population genetics (Morera et al 2003) and forensic studies (Morales et al 2001). All of these investigations possess a sampling bias towards a geographic region (mostly the Central Valley) or disease phenotype.…”

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confidence: 99%

Ancestry Informative Markers Clarify the Regional Admixture Variation in the Costa Rican Population

Campos-Sánchez¹,

Raventós²,

Barrantes³

2013

Human Biology

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confidence: 99%

Ancestry Informative Markers Clarify the Regional Admixture Variation in the Costa Rican Population

Campos-Sánchez¹,

Raventós²,

Barrantes³

2013

Human Biology

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“…D1S80 allele frequencies were studied in a large number of populations worldwide. In this study, 76 different population data (including the data presented in this study) (Al-Nassar et al, 1996;Alkhayat et al, 1996;Balamurugan et al, 2001;Bernal et al, 2000;Cabrero et al, 1995;Çakir et al, 2001;Cerda-Flores et al, 2002;Ciesielka et al, 1996;Das and Seshadri, 2004;Gutowski et al, 1995;Halos et al, 1999;Herrera et al, 2004;Keys et al, 1996;Lorentea et al, 1997;Mastana, 1999;Matamoros et al, 2004;Morales et al, 2001;Ruangjirachuporn et al, 2006;Sachdeva et al, 2004;Sajib et al, 2016;Soares-Vieira et al, 2000;Tenaglia et al, 2004;Trivedi et al, 2002;Vallinoto et al, 2003;Verbenko et al, 2006;Yunis et al, 2001) were fed into POPTREE2 and a phylogenetic tree was constructed following neighbor-joining (NJ) method (Figure 1). Phylogenetic analysis based on the D1S80 alleleic profiles placed the four indigenous populations along with the mainstream Bangladeshis, the north Indian Tamils and the mixed Panjabi Indians in a clade separated from the rest.…”

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confidence: 99%

Genetic polymorphism study at D1S80 VNTR in four major tribal populations (Garo, Santal, Khasia and Monipuri) of Bangladesh

Sajib

Hasan

et al. 2016

Asian Australas. J. Biosci. Biotechnol.

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D1S80 is a highly informative variable number of tandem repeat (VNTR) marker located in the telomeric region of chromosome 1 at 1p36-p35. Since its discovery, the D1S80 locus has been used widely in determining the origins and genetic relations among and between various populations worldwide. Here, we studied the allele frequencies and other population genetic parameters at the D1S80 locus among individuals from four major tribal populations in Bangladesh (Santal, Garo, Monipuri and Khasia). The data was then compared with the other populations including the mainstream Bengali population. A total of 31 different alleles were detected with repeat unit numbers ranging between 14 and 50. D1S80 allele with 18 repeats was the most frequent in three populations except the Santals, in which allele with 19 repeats was the most common. Observed heterozygosity was less than the expected in all four populations. Pair-wise observed genetic distances were, in general, more between the tribal populations and the mixed mainstream Bangladeshis compared to the distances between the tribal populations. Comparison of D1S80 allelic frequency distribution among seventy-six different populations placed the tribal populations along with the mainstream mixed Bangladeshis, Tamils and mixed Panjabi Indians in a clade separated from the rest. Asian Australas. J. Biosci. Biotechnol. 2016, 1 (2), 386-393

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“…A comparison of allele frequencies in the population under study has been performed with other studies from the Central-American populations of El Salvador [5,6] and Costa Rica [7,8]. These comparisons revealed statistically significant differences (data not shown).…”

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confidence: 94%

Population data on nine short tandem repeat loci and D1S80 in a sample from Honduras

Matamoros¹,

Silva

Garcı́a

2004

Forensic Science International

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Allele frequencies of markers LDLR, GYPA, D7S8, HBGG, GC, HLA-DQA1 and D1S80 in the general and minority populations of Costa Rica

Cited by 8 publications

References 1 publication

Ancestry Informative Markers Clarify the Regional Admixture Variation in the Costa Rican Population

Ancestry Informative Markers Clarify the Regional Admixture Variation in the Costa Rican Population

Genetic polymorphism study at D1S80 VNTR in four major tribal populations (Garo, Santal, Khasia and Monipuri) of Bangladesh

Population data on nine short tandem repeat loci and D1S80 in a sample from Honduras

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