BackgroundPrior observational studies have identified a relationship between the composition of gut microbiota and the onset of acne. To ascertain the causal relationship underlying this association, we adopted the Mendelian randomization (MR) method, which offers a powerful approach to causal inference.MethodsSummary statistics on gut microbiota and acne were obtained from the MiBioGen and FinnGen consortium, respectively. The causal relationship was assessed using multiple methods in a two‐sample framework, including MR Egger, weighted median, inverse variance weighted (IVW), and weighted mode. Furthermore, the heterogeneity and horizontal pleiotropy analyses were conducted, along with the leave‐one‐out method.ResultsThe IVW estimation indicated that Allisonella (odds ratio [OR] = 1.42, 95% confidence interval [CI] = 1.18–1.70, p = 0.0002) and Bacteroides (OR = 2.25, 95% CI = 1.48–3.42, p = 0.0001) have adverse effects on acne. By contrast, Ruminococcus torques group (OR = 0.41, 95% CI = 0.25–0.65, p = 0.0002) showed a beneficial effect on acne. In addition, Candidatus soleaferrea (OR = 0.75, 95% CI = 0.60–0.95, p = 0.0149), Eubacterium coprostanoligenes group (OR = 0.67, 95% CI = 0.47–0.95, p = 0.0230), Fusicatenibacter (OR = 0.71, 95% CI = 0.52–0.97, p = 0.02897), and Lactobacillus (OR = 0.72, 95% CI = 0.58–0.90, p = 0.0046) showed suggestive associations with acne.ConclusionThe present investigation suggests a causal effect of gut microbiota on acne.