17Phages infecting S. aureus have the potential to be used as therapeutics against antibiotic-18 resistant bacterial infections. However, there is limited information about the mechanism of 19 genome delivery of phages that infect Gram-positive bacteria. Here we present the structures of 20 S. aureus phage P68 in its native form, genome ejection intermediate, and empty particle. The
21P68 head contains seventy-two subunits of inner core protein, fifteen of which bind to and alter 22 the structure of adjacent major capsid proteins and thus specify attachment sites for head 23 fibers. Unlike in the previously studied phages, the head fibers of P68 enable its virion to 24 position itself at the cell surface for genome delivery. P68 genome ejection is triggered by 25 disruption of the interaction of one of the portal protein subunits with phage DNA. The inner 26 core proteins are released together with the DNA and enable the translocation of phage 27 genome across the bacterial membrane into the cytoplasm.
29Introduction 32 Phages from the family Podoviridae have complex virions composed of genome-containing 33 heads and short non-contractile tails. The tail is attached to a special fivefold vertex of the head 34 in which a pentamer of capsid proteins is replaced by a portal complex. The tails of podoviruses 35 are formed of lower collar proteins, knobs, spikes, and fibers 1 . Podoviruses that infect S. aureus 36 often use cell wall teichoic acid as a receptor 2,3 . After binding to a cell, podoviruses disrupt the 37 bacterial cell wall and eject their genomes into the cell cytoplasm 1 .
38Phages infecting S. aureus are of interest because of their potential use in phage therapy 39 against antibiotic-resistant infections 4 . S. aureus causes a range of illnesses from minor skin 40 infections to life-threatening diseases such as pneumonia, meningitis, and sepsis 5-7 . Many 41 S. aureus strains, particularly those found in hospitals, carry antibiotic resistance genes 8,9 . 42 Annual medical expenses caused by S. aureus in the United States and European Union have 43 been estimated to exceed $2.5 billion 10-12 .
44Bacteriophage P68 belongs to the subfamily Picovirinae, and the genus P68virus of 45 phages infecting S. aureus 13 . P68 has a 18,227-bp-long double-stranded DNA genome that 46 encodes 22 open reading frames 13 . Here we used a combination of cryo-electron microscopy 47 (cryo-EM) and X-ray crystallography to structurally characterize the virion of phage P68 and the 48 mechanism of its genome ejection. 49 50 4 Results and Discussion 51 Virion structure of phage P68
52The virion of P68 has an icosahedral head with a diameter of 480 Å and 395 Å-long tail, 53 which is decorated with tail fibers (Fig. 1ab, Table S1, S2). Electron micrographs of a purified P68 54 sample contained not only native virions but also particles that were in the process of genome 55 release and empty particles (SFig. 1). The complete structure of the native virion of P68 was 56 determined to a resolution of 4.7 Å (SFig. 2, 3, Table S1)....