Multi-modal neuroimaging, including electroencephalography (EEG), magnetoencephalography (MEG), positron emission tomography (PET), magnetic resonance imaging (MRI), Near-infrared spectroscopy (NIRS), and single-photon emission computed tomography (SPECT), have been widely used in the diagnosis of neurological diseases, such as Alzheimer's disease (AD), Parkinson's disease (PD), and multiple sclerosis, etc. Each neuroimaging technique has its own merits, and multi-modal neuroimaging is helpful for further improving the diagnosis accuracy of neurological diseases.This special issue focuses on the development of neuroimaging markers for early diagnosis of neurological disorders. The goal is to provide an overview to the current state-of-the-art advances in disease diagnosis using multi-modal neuroimaging techniques and promote further discussion of applying the imaging technologies in future clinical medicine. This special issue includes 10 research articles that cover a wide range of topics related to recent advances in neuroimaging marker studies of neurological disease, which can be the development and evaluation of new methods for neuroimaging data analysis and their applications. The applications include: combining clinical measures, behavioral performance with neuroimaging data to improve disease screening, diagnosis, progress monitoring, as well as predicting disease prognosis and treatment efficacy.The first part of this special issue includes 5 articles. The first two articles examine the disease-related alterations in resting state of human brain and the next three articles focus on the clinical diagnosis and applications of Electrocardiograph (ECG), digital subtraction angiography (DSA) and computed tomography (CT) in neurological disease. Brief discussion of these studies are as follows.Resting-state fMRI is a functional brain imaging method, which can be used to evaluate regional interactions that occur when a subject is not performing an explicit task [1]. The first two papers address the resting-state fMRI as below. Tan, et al, explored the alterations of regional synchronization in infantile spasm patients during resting state through regional homogeneity analysis [2]. Although