Background: The use of medicinal plants in primary healthcare is central among rural communities in Uganda due to the expensive and often inaccessible conventional healthcare. Skin diseases pose a serious health risk given the challenge of HIV-AIDS whose opportunist infections manifest themselves as skin complications. The study investigated, identified and documented plant species used to manage skin infections, the plant parts used, methods of preparation and administration of herbal remedies.Methods: An ethnobotanical survey of medicinal plant species used to treat skin diseases was conducted in Katabi Sub-County, Wakiso District in Uganda using semi structured interviews. A questionnaire, checklist, and personal observation were the research instruments used. Descriptive statistics were used to present the data.Results: A total of 60 respondents were interviewed from 20 villages during this study. 50 plant species belonging to 29 families were documented. The highest proportion of species (25%) was used against fungal infections. Other proportions of plant species against their respective diseases were; 24%, 20%, 16% and 16% for allergies, wounds, skin rash and warts respectively and were inclusive of each other. Other mentioned diseases were treated by low proportions of plant species. The most frequently used plants were Psorospermum febrifugum (33%), Albizia coriaria (32%), Hoslundia opposita (37%), Justicia betonica (30%), and Euphorbia tirucalli (25%) Herbs (55%) were the main growth habit of medicinal plant species followed by trees (25%), shrubs (17%) and vines (2%) and grasses (1) Leaves (64%) were the most commonly used plant parts, followed by bark and roots (14% each), fruits (10%), flowers (8%), sap (5%) and pseudostem (2%). Fungal infections had the highest informant consensus factor (0.9) and Justicia betonica had the highest fidelity level (89%) for treatment of fungal infections. Topical administration to affected parts was the major method of administration at 54%. Other methods were oral, bathing, compresses, poultices and inhalation.