Three genes encoding DNA ligases, LIG1, LIG3, and LIG4, have been identified in the mammalian genome (1). The products of these genes appear to be responsible for the DNAjoining events that complete DNA replication, genetic recombination, and DNA repair in mammalian cells. In the lower eukaryote Saccharomyces cerevisiae, the DNA ligases encoded by the CDC9 and DNL4 genes are functional homologs of the LIG1 and LIG4 genes. However, this organism apparently lacks a LIG3 gene homolog (2-5).Mammalian DNA ligases consist of a conserved catalytic domain flanked by unrelated sequences (1). It has been suggested that protein-protein interactions mediated by the unique regions flanking the catalytic domain determine the cellular functions of these enzymes. In support of this hypothesis, recent studies have identified specific protein partners for each of the LIG gene products. The non-catalytic N-terminal domain of DNA ligase I interacts with both proliferating cell nuclear antigen and DNA polymerase , implicating this species of DNA ligase in DNA replication and excision repair pathways (6, 7). In contrast, the non-catalytic C-terminal extensions of DNA ligases III␣ and IV contain BRCT motifs (8), a putative protein-protein interaction domain first identified in the protein encoded by the breast cancer susceptibility gene BRCA1 (9, 10). The single BRCT motif of DNA ligase III␣ mediates complex formation with the DNA repair protein XRCC1, linking this species of DNA ligase with base excision repair and the repair of DNA single-strand breaks (11,12). Similarly, the region of DNA ligase IV containing tandem BRCT motifs is involved in complex formation with the DNA repair protein XRCC4,implicating DNA ligase IV in non-homologous end joining (NHEJ) 1 and V(D)J recombination (13, 14). Human individuals with mutations in either the LIG1 (15) or LIG4 gene (16) have been identified. The initial symptoms of the individual with DNA ligase I deficiency were recurrent infections caused by severe combined immunodeficiency (17). Cell lines established from this patient exhibited defects in Okazaki fragment joining and sensitivity to a wide range of DNA-damaging agents, a phenotype consistent with the predicted role of DNA ligase I in DNA replication and excision repair (18,19). When the DNA ligase I-deficient cells were activated for V(D)J recombination by ectopic expression of the RAG proteins, there was no apparent defect in this type of recombination (20,21). However, studies with cell-free extracts suggest that DNA ligase I contributes to the completion of V(D)J recombination (22).The individual with a mutated LIG4 gene presented with leukemia. Unfortunately, attempts to treat this disease with chemotherapy and then ionizing radiation caused a severe reaction (16,23). The extreme radiosensitivity of cell lines established from this individual is consistent with the predicted role of DNA ligase IV in the repair of DNA double-strand breaks by NHEJ. Surprisingly, the DNA ligase IV-deficient individual did not appear to be immunodefi...