Paenarthrobacter
nicotinovorans is a soil Gram-positive
nicotine-degrading microorganism (NDM) that harbors a 165 kb pAO1
catabolic megaplasmid. The nicotine catabolic genes on pAO1 have been
sequenced, but not all the details on the regulation and interplay
of this pathway with the general metabolism of the cell are available.
To address this issue at the protein level, a time-based shotgun proteomics
study was performed. P. nicotinovorans was grown
in the presence or absence of nicotine, and the cells were harvested
at three different time intervals: 7, 10, and 24 h after inoculation.
The cells were lysed, separated on SDS-PAGE, and digested by in-gel
digestion using trypsin, and the resulting peptide mixture was analyzed
using nanoliquid chromatography tandem mass spectrometry. We found
an extensive number of proteins that are both plasmidal- and chromosomal-encoded
and that work together in the energetic metabolism via the Krebs cycle
and nicotine pathway. These data provide insight into the adaptation
of the bacterial cells to the nicotine metabolic intermediates and
could serve as a basis for future attempts to genetically engineer
the pAO1-encoded catabolic pathway for increased bioremediation efficiency
or for the production of valuable chemicals. The mass-spectrometry-based
proteomics data have been deposited to the PRIDE partner repository
with the data set identifier PXD012577.