OBJECTIVE
Despite advances in surgical techniques, neurocognitive decline (NCD) after cardiopulmonary bypass (CPB) remains a common and serious complication. We have previously demonstrated that patients with NCD have unique genetic responses 6 hours after CPB when compared with normal patients (NORM). We used genomic microarray to objectively investigate whether patients with NCD had associated preoperative gene expression profiles, and how these profiles changed up to four days after surgery.
METHODS
Cardiac surgery patients underwent neurocognitive assessments preoperatively and four days after surgery. Skeletal muscle was collected intra-operatively. Whole blood collected pre-CPB, 6 hours post-CPB, and on post-operative day four was hybridized to Affymetrix Gene Chip U133 Plus 2.0 microarrays. Gene expression in patients with NCD was compared with gene expression in the NORM group using JMP Genomics. Only genes that were commonly expressed in the two groups with a false discovery rate of 0.05 and a fold change of >1.5 were carried forward to pathway analysis using Ingenuity Pathway Analysis. Microarray gene expression was validated by Green real–time polymerase chain reaction and western blotting.
RESULTS
17 out of 42 patients developed NCD. 54,675 common transcripts were identified on microarray in each group across all time points. Preoperatively there were 140 genes that were significantly altered between the NORM and NCD groups (p < 0.05). Pathway analysis demonstrated that preoperatively patients with NCD had increased regulation in genes associated with inflammation, cell death, and neurologic dysfunction. Interestingly, the number of significantly regulated genes between the two groups changed over each time point, and decreased from 140 preoperatively, to 64, six hours after CPB, and 25, four days after surgery. There was no correlation in gene expression between the blood and skeletal muscle.
CONCLUSIONS
Patients who developed NCD post-CPB had increased differential gene expression before surgery versus patient who did not develop NCD. While significant differences in gene expression also existed post-operatively, these differences gradually decreased over time. Preoperative gene expression may be associated with neurologic injury after CPB. Further investigation into these genetic pathways may help predict patient outcome and guide patient selection.