For the efficient production of target metabolites from carbohydrates, syngas, or H 2 -CO 2 by genetically engineered Moorella thermoacetica, the control of acetate production (a main metabolite of M. thermoacetica) is desired. Although propanediol utilization protein (PduL) was predicted to be a phosphotransacetylase (PTA) involved in acetate production in M. thermoacetica, this has not been confirmed. Our findings described herein directly demonstrate that two putative PduL proteins, encoded by Moth_0864 (pduL1) and Moth_1181 (pduL2), are involved in acetate formation as PTAs. To disrupt these genes, we replaced each gene with a lactate dehydrogenase gene from Thermoanaerobacter pseudethanolicus ATCC 33223 (T-ldh). The acetate production from fructose as the sole carbon source by the pduL1 deletion mutant was not deficient, whereas the disruption of pduL2 significantly decreased the acetate yield to approximately one-third that of the wild-type strain. The double-deletion (both pduL genes) mutant did not produce acetate but produced only lactate as the end product from fructose. These results suggest that both pduL genes are associated with acetate formation via acetyl-coenzyme A (acetyl-CoA) and that their disruption enables a shift in the homoacetic pathway to the genetically synthesized homolactic pathway via pyruvate.IMPORTANCE This is the first report, to our knowledge, on the experimental identification of PTA genes in M. thermoacetica and the shift of the native homoacetic pathway to the genetically synthesized homolactic pathway by their disruption on a sugar platform.KEYWORDS thermophilic, acetogen, Moorella, transformation, biomass, sugar, syngas, fermentation T he use of various forms of renewable energy and industrial bulk chemicals is increasingly desired because of concerns about the depletion of fossil resources and the existence of global warming/climate change. Solar, wind, waterpower, and biomass energies are abundant forms of renewable energy that are available all over the world, and they are promising as sources that could meet the global demand for energy as electricity and heat. However, the number and amount of renewable resources for producing bulk substrates are very limited. Presently, bulk chemicals used to produce, for example, plastics and paints, are produced from naphtha.