The organic matrix in forming enamel consists largely of the amelogenin protein self-assembled into nanospheres that are necessary to guide the formation of the unusually long and highly ordered hydroxyapatite (HAP) crystallites that constitute enamel. Despite its ability to direct crystal growth, the interaction of the amelogenin protein with HAP is unknown. However, the demonstration of growth restricted to the c-axis suggests a specific protein-crystal interaction, and the charged COOH terminus is often implicated in this function. To elucidate whether the COOH terminus is important in the binding and orientation of amelogenin onto HAP, we have used solid state NMR to determine the orientation of the COOH terminus of an amelogenin splice variant, LRAP (leucine-rich amelogenin protein), which contains the charged COOH terminus of the full protein, on the HAP surface. These experiments demonstrate that the methyl 13 C-labeled side chain of Ala 46 is 8.0 Å from the HAP surface under hydrated conditions, for the protein with and without phosphorylation. The experimental results provide direct evidence orienting the charged COOH-terminal region of the amelogenin protein on the HAP surface, optimized to exert control on developing enamel crystals.Enamel is composed of unusually long and highly oriented hydroxyapatite (HAP) 1 crystals (1), Ͼ1000 times longer than the HAP crystals found in bone (2). The molecular interactions leading to this highly controlled structure are not currently well understood, but the organic matrix is observed to be essential to the proper formation of enamel (3). Amelogenin proteins constitute Ͼ90% of the protein present in developing enamel (3). Amelogenin knock-out mice experience improper enamel formation, and genetic mutations of amelogenin also result in enamel defects, establishing the importance of amelogenin in enamel formation (3, 4).Despite its importance, mechanisms at the molecular level directing amelogenins control of enamel crystallites are not understood. It is known that under physiological conditions, amelogenin self-assembles into nanospheres of ϳ20 nm in diameter, consisting of multiple monomers, and this is believed to be its functional form (5-7). Transmission electron microscope studies have shown that the amelogenin nanospheres align in beaded rows along the c-axis of the developing enamel crystal (5), exhibiting exquisite control over the resulting morphology. This suggests a specific matrix-crystal interaction, yet the region of the protein interacting with HAP to result in the observed crystal regulation has not been identified. It has been postulated, based on experimental evidence, that both the charged NH 2 and COOH terminus of amelogenin are exposed on the surface of the nanospheres (6, 8 -11), aiding in proteinprotein interactions, increasing the solubility, and enhancing calcium phosphate interactions for the hydrophobic protein (12). These hypotheses are supported by in vitro experiments, reviewed recently by Moradian-Oldak (13), demonstrating the effect ...