Analysis of simple sequence repeat (SSR) polymorphism between N22 and Uma rice varieties for marker assisted selection

Parental Polymorphism Survey for Evaluation and Selection of Contrasting Parents for Drought Tolerance in Rice (Oryza sativa L.) by Using SSR Markers

“…According to previous studies, the largest polymorphism was found on chromosome 5 (17.02%) and the lowest was found on chromosome 10 (5.36%), in a survey of chromosome polymorphism performed by Challa and Kole [1] employing parents with different responses to drought. Out of a total of 197 markers examined, a parental polymorphism study between N22 and Uma found 20.82 percent polymorphism, with 41 polymorphic markers [17]. Another study evaluated 647 SSR markers from parental lines PR122 and IR10M196, and detected 108 polymorphic markers, for a total polymorphism level of 16.69% [5].…”

Polymorphic Identification of Simple Sequence Repeat (SSR) Marker for Developing Aluminum-Tolerance Upland Rice

“…Moreover, reported the use of 40 SSR primers linked to Al tolerance in 36 cross-progeny produced from Situ Patenggang X B11930F-TB-2 crossing obtained 3 polymorphic SSR primers. According to Waghmare et al (2018), the objective of polymorphic genetic markers application in plant breeding activities, one of which is for parentage determination and another is to identify genetic markers and map loci affecting quantitative traits to monitor these loci during introgression breeding programs.…”

Marker-assisted selection: A smart biotechnological strategy for modern plant breeding

“…References AFLP (Amplified fragment length polymorphism) used for DNA fingerprinting (Vuylsteke et al, 2007) AP-PCR (Arbitrarily primed PCR) used for genomic fingerprinting (Welsh & McClelland, 1991) AS-PCR (Allele-specific PCR) used for detection of mutations, polymorphisms, and haplotypes (Bottema et al, 1993) ASAP (Allele-specific Associated Primers) used for developing resistance in Pisum sativum against bean yellow mosaic virus (Yu et al, 1996) CAPS (Cleaved amplified polymorphic sequences) used for preparation of genetic map (Shavrukov, 2016) DAF (DNA amplification fingerprinting) used for producing a characteristic spectrum of short DNA products useful for detecting genetic differences (Caetano-Anollés et al, 1991) ISA (Inter-SSR amplification) used for genome fingerprinting (Zietkiewicz et al, 1994) RAPD (Random-amplified polymorphic DNA) used for comparing DNA sequences (Kumar & Gurusubramanian, 2011) RFLP (Restriction fragment length polymorphism) used to characterize the microbial communities (Schütte et al, 2008) SAP (Specific amplicon polymorphism) for analysis of PCR products amplified from mapped loci of rice genomic DNA (Williams et al, 1991) SCAR (Sequence characterized amplified region) used for Bdv2 gene's molecular confirmation in wheat germplasm and assessment for resistance against barely yellow dwarf viruses (Kausar et al, 2015) SPAR (Single Primer Amplification Reactions) for the assessment of diversity in Jatropha curcas L. (Ranade et al, 2008) SSLP (Microsatellite simple sequence length polymorphism) for its characterization in rice (Panaud et al, 1996) SSR (Simple sequence repeats) for analysis of its polymorphism between N22 and Uma rice varieties (Waghmare et al, 2018) STS (Sequence tagged sites) for its Generation and validation from diverse genotypes of dioecious Jojoba (Heikrujam et al, 2014) (Rana et al, 2019) index combining molecular and phenotypic data, and (6) genomic selection, in which genomic estimated breeding value is obtained using information from genome-wide markers.…”