Electron paramagnetic resonance (EPR) and electronnuclear double resonance studies of the photosystem (PS) I quinone acceptor, A 1 , in phylloquinone biosynthetic pathway mutants are described. Room temperature continuous wave EPR measurements at X-band of whole cells of menA and menB interruption mutants show a transient reduction and oxidation of an organic radical with a g-value and anisotropy characteristic of a quinone. In PS I complexes, the continuous wave EPR spectrum of the photoaccumulated Q ؊ radical, measured at Q-band, and the electron spin-polarized transient EPR spectra of the radical pair P700 ؉ Q ؊ , measured at X-, Q-, and W-bands, show three prominent features: (i) Q ؊ has a larger g-anisotropy than native phylloquinone, (ii) Q ؊ does not display the prominent methyl hyperfine couplings attributed to the 2-methyl group of phylloquinone, and (iii) the orientation of Q ؊ in the A 1 site as derived from the spin polarization is that of native phylloquinone in the wild type. Electron spin echo modulation experiments on P700 ؉ Q ؊ show that the dipolar coupling in the radical pair is the same as in native PS I, i.e. the distance between P700؉ and Q ؊ (25.3 ؎ 0.3 Å) is the same as between P700 ؉ and A 1 ؊ in the wild type. Pulsed electron-nuclear double resonance studies show two sets of resolved spectral features with nearly axially symmetric hyperfine couplings. They are tentatively assigned to the two methyl groups of the recruited plastoquinone-9, and their difference indicates a strong inequivalence among the two groups when in the A 1 site. These results show that Q (i) functions in accepting an electron from A 0 ؊ and in passing the electron forward to the iron-sulfur clusters, (ii) occupies the A 1 site with an orientation similar to that of phylloquinone in the wild type, and (iii) has spectroscopic properties consistent with its identity as plastoquinone-9.Light-induced charge separation in all well characterized photosynthetic reaction centers (RCs) 1 proceeds via a common multistep electron transfer process to a stabilized, charge-separated radical pair state P ϩ Q Ϫ consisting of an oxidized (bacterio)chlorophyll donor and a reduced quinone acceptor (whether the green sulfur bacterial RC and the heliobacterial RC contain a quinone acceptor is still controversial). Two types of RCs can be distinguished according to the electron acceptors and electron transfer pathways subsequent to the first quinone acceptor. A series of iron-sulfur clusters with electron transfer essentially perpendicular to the membrane characterize Type I RCs (PS I, green sulfur bacteria, and heliobacteria), whereas a second quinone acceptor Q B and electron transfer parallel to the membrane from the first quinone acceptor Q A characterize Type II RCs (PS II and the RC of purple bacteria). The first quinone is therefore the interface either between electron transfer involving organic cofactors and electron transfer involving iron-sulfur clusters (Type I) or between pure electron transfer and coupled electron/proton tr...