Chlamydiae are unusual obligate intracellular bacteria that cause serious infections in humans. Chlamydiae contain genes that appear to encode products with peptidoglycan biosynthetic activity. The organisms are also susceptible to antibiotics that inhibit peptidoglycan synthesis. However, chlamydiae do not synthesize detectable peptidoglycan. The paradox created by these observations is known as the chlamydial anomaly. The MurC enzyme of chlamydiae, which is synthesized as a bifunctional MurC-Ddl product, is expected to possess UDP-N-acetylmuramate (UDP-MurNAc):L-alanine ligase activity. In this paper we demonstrate that the MurC domain of the Chlamydia trachomatis bifunctional protein is functionally expressed in Escherichia coli, since it complements a conditional lethal E. coli mutant possessing a temperature-sensitive lesion in MurC. The recombinant MurC domain was overexpressed in and purified from E. coli. It displayed in vitro ATP-dependent UDP-MurNAc:L-alanine ligase activity, with a pH optimum of 8.0 and dependence upon magnesium ions (optimum concentration, 20 mM). Its substrate specificity was studied with three amino acids (L-alanine, L-serine, and glycine); comparable V max /K m values were obtained. Our results are consistent with the synthesis of a muramic acid-containing polymer in chlamydiae with UDP-MurNAc-pentapeptide as a precursor molecule. However, due to the lack of specificity of MurC activity in vitro, it is not obvious which amino acid is present in the first position of the pentapeptide.Chlamydiae are an important group of obligate intracellular pathogens that cause serious infections in humans (25). They are distinguished from other eubacteria by a unique development cycle involving two morphological forms, one adapted to extracellular survival (the infectious elementary body [EB]) and the other adapted to intracellular multiplication (the reticulate body [RB]) (22,25). In the development cycle, entry of EBs into host cells is followed by transformation to RBs, RB division, and expansion of the chlamydial microcolony, followed by differentiation back to EBs and release from the infected cell (22,25). The fragility and pleomorphism of the RB contrasts with the rigidity and stability of the EB (7, 22). These differences might be explained by the presence of peptidoglycan in EBs, which would confer mechanical stability.