-Impaired glucose tolerance (IGT) and type 2 diabetes (T2DM) are polygenic disorders with complex pathophysiologies; recapitulating them with mouse models is challenging. Despite 70% genetic homology, C57BL/6J (BL6) and C57BLKS/J (BLKS) inbred mouse strains differ in response to dietand genetic-induced obesity. We hypothesized these differences would yield insight into IGT and T2DM susceptibility and response to pharmacological therapies. To this end, male 8-wk-old BL6 and BLKS mice were fed normal chow (18% kcal from fat), high-fat diet (HFD; 42% kcal from fat), or HFD supplemented with the PPAR␥ agonist pioglitazone (PIO; 140 mg PIO/kg diet) for 16 wk. Assessments of body composition, glucose homeostasis, insulin production, and energy metabolism, as well as histological analyses of pancreata were undertaken. BL6 mice gained weight and adiposity in response to HFD, leading to peripheral insulin resistance that was met with increased -cell proliferation and insulin production. By contrast, BLKS mice responded to HFD by restricting food intake and increasing activity. These behavioral responses limited weight gain and protected against HFD-induced glucose intolerance, which in this strain was primarily due to -cell dysfunction. PIO treatment did not affect HFD-induced weight gain in BL6 mice, and decreased visceral fat mass, whereas in BLKS mice PIO increased total fat mass without improving visceral fat mass. Differences in these responses to HFD and effects of PIO reflect divergent human responses to a Western lifestyle and underscore the careful consideration needed when choosing mouse models of diet-induced obesity and diabetes treatment. C57BL/6J; C57BLKS/J; diet-induced obesity; pioglitazone; mouse models of T2DM GENOMEWIDE ASSOCIATION STUDIES (GWAS) indicate that the vast majority of impaired glucose tolerance (IGT) and type 2 diabetes mellitus (T2DM) are polygenic and represent a complex interplay between genetic susceptibility, dietary and lifestyle choices, and environment (48). The initial treatment of T2DM typically consists of a combination of antihyperglycemic agents, including metformin, sulfonylureas, PPAR␥ agonists, or thiazolidinediones (TZDs), and incretin-based therapies; however, this approach is associated with high secondary failure rates, and many patients will ultimately transition to insulin therapy in order to achieve glycemic targets (45). While the field of T2DM pharmacogenomics is relatively undeveloped compared with other complex diseases, large clinical studies have revealed important differences in response to these therapies based on sex, ethnicity, and other genetic differences (9, 51). Given the heterogeneous nature of IGT and T2DM susceptibility and treatment response, modeling these disorders in the laboratory setting using inbred strains of mice is fraught with inherent challenges.C57BL/6J (BL6) mice are one of the most widely utilized inbred strains in biomedical research (1). Many knockout and transgenic mouse models are bred congenic on the BL6 background for metabolic...