Application of omics technologies for a deeper insight into quali-quantitative production traits in broiler chickens: A review

Zampiga, Marco; Flees, Joshua J.; Meluzzi, Adele; Dridi, Sami; Sirri, Federico

doi:10.1186/s40104-018-0278-5

Cited by 39 publications

(34 citation statements)

References 168 publications

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“…Volatile fatty acids are important contributors to the overall performance of the animal because they improve growth, production, and health simultaneously. With these increase in VFAs means also increase in energy available for the animal, which explains the improvement of breast and legs yield, as well as the water holding capacity of meat but low abdominal fat deposition in dietary supplementation of E. faecium (Zampiga et al 2018). The significant increase in butyrate concentration (Table 3) during fermentation is well known for many regulatory and immunological functions in cattle.…”

Section: Discussionmentioning

confidence: 99%

Rumen fermentation and microbial community composition influenced by live Enterococcus faecium supplementation

et al. 2019

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Supplementation of appropriate probiotics can improve the health and productivity of ruminants while mitigating environmental methane production. Hence, this study was conducted to determine the effects of Enterococcus faecium SROD on in vitro rumen fermentation, methane concentration, and microbial population structure. Ruminal samples were collected from ruminally cannulated Holstein–Friesian cattle, and 40:60 rice straw to concentrate ratio was used as substrate. Fresh culture of E. faecium SROD at different inclusion rates (0, 0.1%, 0.5%, and 1.0%) were investigated using in vitro rumen fermentation system. Addition of E. faecium SROD had a significant effect on total gas production with the greatest effect observed with 0.1% supplementation; however, there was no significant influence on pH. Supplementation of 0.1% E. faecium SROD resulted in the highest propionate ( P = 0.005) but the lowest methane concentration ( P = 0.001). In addition, acetate, butyrate, and total VFA concentrations in treatments were comparatively higher than control. Bioinformatics analysis revealed the predominance of the bacterial phyla Bacteroidetes and Firmicutes and the archaeal phylum Euryarchaeota . At the genus level, Prevotella (15–17%) and Methanobrevibacter (96%) dominated the bacterial and archaeal communities of the in vitro rumen fermenta, respectively. Supplementation of 0.1% E. faecium SROD resulted in the highest quantities of total bacteria and Ruminococcus flavefaciens , whereas 1.0% E. faecium SROD resulted in the highest contents of total fungi and Fibrobacter succinogenes. Overall, supplementation of 0.1% E. faecium SROD significantly increased the propionate and total volatile fatty acids concentrations but decreased the methane concentration while changing the microbial community abundance and composition.

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Section: Discussionmentioning

confidence: 99%

Rumen fermentation and microbial community composition influenced by live Enterococcus faecium supplementation

et al. 2019

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“…MetaboAnalyst provides a variety of statistical analysis tools, including visualizing programs, multivariate analyses, and metabolite pathway analyses. These metabolomic approaches, especially CE-MS, GC-MS, LC-MS, and NMR, in combination with subsequent data analyses have recently been increasingly used in animal-based food research fields [10][11][12]76].…”

Section: Ce Gc Lcmentioning

confidence: 99%

“…Such nutrimetabolomic approaches have also been attempted in chicken, of which growth performance, breast yield, and meat quality are improved with dietary lysine supplementation [12]. Aiming at an increase in flavor compounds in chicken, the effect of dietary lysine supplementation at a 1.5-fold level of a standard requirement on the breast muscle was investigated by a CE-MS approach.…”

Section: Animal Feedingmentioning

confidence: 99%

MEATabolomics: Muscle and Meat Metabolomics in Domestic Animals

et al. 2020

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In the past decades, metabolomics has been used to comprehensively understand a variety of food materials for improvement and assessment of food quality. Farm animal skeletal muscles and meat are one of the major targets of metabolomics for the characterization of meat and the exploration of biomarkers in the production system. For identification of potential biomarkers to control meat quality, studies of animal muscles and meat with metabolomics (MEATabolomics) has been conducted in combination with analyses of meat quality traits, focusing on specific factors associated with animal genetic background and sensory scores, or conditions in feeding system and treatments of meat in the processes such as postmortem storage, processing, and hygiene control. Currently, most of MEATabolomics approaches combine separation techniques (gas or liquid chromatography, and capillary electrophoresis)–mass spectrometry (MS) or nuclear magnetic resonance (NMR) approaches with the downstream multivariate analyses, depending on the polarity and/or hydrophobicity of the targeted metabolites. Studies employing these approaches provide useful information to monitor meat quality traits efficiently and to understand the genetic background and production system of animals behind the meat quality. MEATabolomics is expected to improve the knowledge and methodologies in animal breeding and feeding, meat storage and processing, and prediction of meat quality.

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“…The analysis of small polar or lipophilic non-volatile molecules by nuclear magnetic resonance or mass spectrometry metabolomics is another powerful means to non-invasively detect subtle phenotypic changes, which are critical for farm management, but this method has rarely been applied in livestock studies [10]. However, some advances have recently been achieved in chickens to predict or to have a better understanding of quality or digestive physiology issues using blood, muscle, and digestive content metabolomes [11–13].…”

Section: Introductionmentioning

confidence: 99%

A multiplatform metabolomic approach to characterize fecal signatures of negative postnatal events in chicks: a pilot study

Beauclercq

Lefèvre

Montigny

et al. 2019

J Animal Sci Biotechnol

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Background Negative experiences in early life can induce long-lasting effects on the welfare, health, and performance of farm animals. A delayed placement of chicks in rearing houses has negative effects on their performance, and results in fecal-specific odors detectable by rats. Based on this observation, the volatile organic compounds (VOCs) and metabolites from the feces of 12-day-old chickens were screened for early markers of response to negative events using gas-chromatography and liquid-chromatography coupled with mass spectrometry (GC-MS, LC-HRMS). Results The low reproducibility of solid-phase micro-extraction of the VOCs followed by GC-MS was not suitable for marker discovery, in contrast to liquid extraction of metabolites from freeze-dried feces followed by GC-MS or LC-HRMS analysis. Therefore, the fecal metabolome from 12-day-old chicks having experienced a normal or delayed placement were recorded by GC-MS and LC-HRMS in two genotypes from two experiments. From both experiments, 25 and 35 metabolites, respectively explaining 81% and 45% of the difference between delayed and control chickens, were identified by orthogonal partial least-squares discriminant analysis from LC-HRMS and GC-MS profiling. Conclusion The sets of molecules identified will be useful to better understand the chicks’ response to negative events over time and will contribute to define stress or welfare biomarkers. Electronic supplementary material The online version of this article (10.1186/s40104-019-0335-8) contains supplementary material, which is available to authorized users.

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Application of omics technologies for a deeper insight into quali-quantitative production traits in broiler chickens: A review

Cited by 39 publications

References 168 publications

Rumen fermentation and microbial community composition influenced by live Enterococcus faecium supplementation

Rumen fermentation and microbial community composition influenced by live Enterococcus faecium supplementation

MEATabolomics: Muscle and Meat Metabolomics in Domestic Animals

A multiplatform metabolomic approach to characterize fecal signatures of negative postnatal events in chicks: a pilot study

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