Despite the importance of straying in understanding the ecology of Pacific salmon Oncorhynchus spp. and steelhead O. mykiss, most of what is known about salmon and steelhead straying comes from tagged hatchery fish. We provide estimates of donor straying by natural‐origin spring, summer, and fall Chinook Salmon O. tshawytscha and summer steelhead at three spatial scales in the upper Columbia River watershed by using PIT tags. In total, 823,770 natural‐origin Chinook Salmon and steelhead were PIT‐tagged as juveniles in the Wenatchee, Entiat, Methow, and Okanogan River subbasins and tributaries and the upper Columbia River between 2002 and 2017. Anadromous adults with PIT tags (n = 2,611) were detected at a variety of antenna arrays in the Columbia River basin between 2004 and 2018. Mean donor stray rates of each population were less than 1% at the basin scale (range = 0.0–0.7%), less than 10% at the subbasin scale (range = 0.0–9.8%), and less than 15% at the tributary scale (range = 0.0–14.3%). Many of the populations (11 of 28) that were evaluated across all spatial scales did not have any strays detected, and the mean of means for both species’ stray rates at all spatial scales was generally less than 5% (range = 0.2–4.0%). Chinook Salmon and steelhead strayed at similar rates when originating from the same subbasins and tributaries. Most straying occurred in an upstream direction at the subbasin (84%) and tributary (94%) scales. Variation in stray rates was most consistently associated with spatial scale and location and was less than 15% for both species at all spatial scales.