An early study indicated that superoxide dismutase (SOD) and catalase (CAT) could prevent arsenic (As)-induced sister chromatid exchanges (SCEs) in cultured human lymphocytes (1). Recent studies showed similar results using reactive oxygen species (ROS) scavengers such as SOD, CAT, and dimethyl sulfoxide (DMSO) to counteract mutagenicity, DNA fragmentation, and micronuclei (MN) caused by As (2-4). We observed that DMSO and CAT basically abolished most of the As-induced DNA single strand breaks (SSBs) in human cells with single-cell gel electrophoresis (SCGE) assay (5). These observations have provided indirect but powerful evidence indicating that hydrogen peroxide (H 2 O 2 ) and superoxide anion (O 2 -) are chiefly involved in the genotoxicity of As.However, it is known that ROS-induced DNA damage consists primarily of single strand breaks (SSBs), double strand breaks (DSBs), sites of base loss [apurinic/apyrimidinic (AP) sites], and base lesions (6). Great attention has been paid to ROS-related base damage. SSBs are repaired quickly by cells and of no biologic importance, and the damage of DSBs is important for understanding the lethal effects on cells, but ROS-induced base damage is believed to be one of the main contributors to carcinogenesis. More significantly, base modifications are potential biomarkers of oxidative DNA damage (7).DNA damage-specific endonucleases from Micrococcus luteus have been used previously in combination with sucrose gradient sedimentation (8), alkaline elution (9), and alkaline unwinding (10) to reveal base damage inflicted by ionizing radiation. Now the gene for E. coli formamidopyridine-DNA (FPG) has been cloned and the protein purified to available homogeneity. This makes it possible to combine enzyme digestion with the newly developed sensitive alkaline comet assay to measure ROS-related base damage. FPG cleaves purines including 7,8-dihydro-8-oxoguanine (8-oxoG), formamidopyrimidines, and AP sites (11).Using lesion-specific enzymes in the comet assay to reveal DNA base damage has been described in detail by Collins et al. (12). Observations have been made on As-related alterations in base damage with FPG digestion in bovine aortic endothelial cells (13) and in human vascular smooth muscle cells (14). Detection of 8-hydroxydeoxyguanosine, a biomarker of oxidative DNA damage, was associated with As-related Bowen's disease (15). To clarify further that As induces oxidative DNA damage in human phytohemagglutinin (PHA)-stimulated and unstimulated lymphocytes, we applied the sensitive alkaline comet assay combined with FPG digestion to measure As-induced base lesions. We postulated that if As produces oxidative DNA damage, this specific enzyme, having both DNA glycosylase and endonuclease activities, will recognize and cleave the damaged bases, and that consequently DNA strand breaks will be produced at enzyme-sensitive sites. The breaks, including AP sites, will be converted into comet tail by the alkaline comet assay (SCGE). As a result, the specific enzyme will increase the freq...