BackgroundThere is controversy about the clinical relevance of congenital variants of the ventral laminae of the sixth (C6) and seventh (C7) cervical vertebrae and their relationship with other radiological abnormalities.ObjectivesTo document the prevalence of congenital variants of C6 and C7 and that of other radiological abnormalities from C6 to the second thoracic vertebra (T2).Study designCross‐sectional.MethodsThe study included Warmblood horses ≥3 years of age undergoing clinical assessment at two referral institutions: 127 control horses and 96 cases (neurologic, neck pain or stiffness, or neck‐related forelimb lameness). All horses underwent a standardised orthopaedic and neurologic examination. Lateral–lateral and lateral 45°–55° ventral–lateral dorsal (left to right and right to left) radiographic views of C5 to T2 were acquired and assessed blinded to the horse's clinical category using a predetermined grading system.ResultsThe ventral profile of C7 was abnormal in 54 horses (24.2%). Cases were less likely to have congenital variants than control horses, p = 0.0002, relative risk (RR): 0.63 (95% confidence intervals [CIs]: 0.4, 1.0). There was no association between the presence of a congenital variant of C7 and the presence of modelling of the articular processes (APs) of C6–C7, C7–T1 or T1–T2. Cases were more likely to have severe modelling of the APs at C6–C7, p = 0.01, RR: 1.94, CI: 1.1, 3.5 and C7–T1, p = 0.04, RR: 1.97, CI: 1.2, 3.2 compared with control horses.Main limitationsRadiographs were read by one assessor independently at each institution.ConclusionsThere was no association between the presence of congenital variants of C7 and any other radiological findings. Congenital variants occurred less frequently in cases compared with control horses. There was no association between the presence or absence of a congenital variant and the type of case.