Two enzymatically active heterodimeric forms of an aspartic proteinase, a putative 32 kDa + 16 kDa precursor form and a putative 29 kDa + 11 kDa mature form, are present in resting barley grains (Sarkkinen, P., Kalkkinen, N., Tilgmann, C., Siuro, J., Kervinen, J. & Mikola, L., 1990, in the press). The cDNA corresponding to this enzyme has been cloned and sequenced. The full-length 1863-bp cDNA sequence codes for an open reading frame of 508 amino acids. The open reading frame consists of a 66-amino acid preprosequence and a 442-amino acid mature protein.Comparison of the N-terminal amino acid sequences of the enzyme subunits with the sequence of the cDNA clone indicates that the heterodimeric enzyme is translated as a proenzyme which is processed into two subunits. The localisation of the experimentally determined N-terminal amino acid sequences of all four subunits (32 kDa + 16 kDa and 29 kDa + 11 kDa) in the same transcript, as well as the detection of only one 2.0-kb mRNA on Northern blots from resting seeds, clearly indicates that the larger (32 kDa + 16 kDa) enzyme is an intermediate precursor form of the smaller (29 kDa + 11 kDa) enzyme. The processing pattern of the barley enzyme, which is the first sequenced plant aspartic proteinase, differs from that of all other known aspartic proteinases. The barley enzyme is highly similar to mammalian and yeast aspartic proteinases, especially to human and porcine cathepsin D. This similarity is clearly dispersed over two regions, separated by a dissimilar, barley-specific region of 104 amino acids.In animals and yeast, members of the family of aspartic proteinases, including cathepsin D, renin, chymosin and proteinase A, are very substrate-specific enzymes with well-defined physiological functions. This class of proteinases is involved in the activation of other enzymes, e.g. the lysosomal acid phosphatase and carboxypeptidase Y [l -31 as well as extracellular proteins like procollagen and the prohormonal angiotensinogen [4, 51. Aspartic proteinases are also involved in the digestion and inactivation of specific proteins like the protcinase-inhibitor cystatin and the IC chain of the milk Kcasein [6, 71. A common feature of aspartic proteinases is an active cleft where two aspartate residues play a central role in the catalytic mechanism [S, 91. The amino acid sequences around these aspartate residues are generally conserved. The Note. The novel nucleotide acid sequence data published here has been dcposited with the EMBL sequence data bank and i s available under accession number X56136.Dediwtion. To the memory of Juhani Mikola who initiated this work as a continuation of his research on storage proteins and their mobilisation during germination. activity of most aspartic proteinases is inhibited by the specific inhibitor pepstatin. Different aspartic proteinases differ in their cellular localisation and processing pattern, as well as in their substrate specificity.In plants, aspartic proteinase activity has been localised in seeds from a broad variety of plant sp...