Photosystem II (PSII) is a large membrane bound molecular machine that catalyzes light-driven oxygen evolution from water. PSII constantly undergoes assembly and disassembly because of the unavoidable damage that results from its normal photochemistry. Thus, under physiological conditions, in addition to the active PSII complexes, there are always PSII subpopulations incompetent of oxygen evolution, but are in the process of undergoing elaborate biogenesis and repair. These transient complexes are difficult to characterize because of their low abundance, structural heterogeneity, and thermodynamic instability. In this study, we show that a genetically tagged Psb27 protein allows for the biochemical purification of two monomeric PSII assembly intermediates, one with an unprocessed form of D1 (His27⌬ctpAPSII) and a second one with a mature form of D1 (His27PSII). Both forms were capable of light-induced charge separation, but unable to photooxidize water, largely because of the absence of a functional tetramanganese cluster. Unexpectedly, there was a significant amount of the extrinsic lumenal PsbO protein in the His27PSII, but not in the His27⌬ctpAPSII complex. In contrast, two other lumenal proteins, PsbU and PsbV, were absent in both of these PSII intermediate complexes. Additionally, the only cytoplasmic extrinsic protein, Psb28 was detected in His27PSII complex. Based on these data, we have presented a refined model of PSII biogenesis, illustrating an important role of Psb27 as a gate-keeper during the complex assembly process of the oxygen-evolving centers in PSII.Photosystem II (PSII) 3 is a large membrane protein complex found in the thylakoids membranes of cyanobacteria, algae, and higher plants. It catalyzes oxidation of water and reduction of plastoquinone (PQ). These activities are essential for the conversion of solar energy to the chemical energy used by the vast majority of life on earth and for the production of molecular oxygen.Recent structural studies have provided a detailed yet static view of PSII (1-3). Accordingly, a PSII monomer is comprised of 20 protein subunits, which form a proteinaceous scaffold holding two pheophytin a (Pheo), 35 chlorophyll a (Chla), one non-heme iron, two hemes (Cyt b 559 and Cyt c 550 ), three PQ, and 12 -carotene (4, 5) molecules as cofactors. The light driven electron transfer reactions through the PSII complex requires precise positioning of all these cofactors and an inorganic (Mn 4 -Ca) cluster on lumenal side, the latter of which is also called water-oxidizing complex (WOC). However, the cost of water oxidation is high: photooxidative damage inevitably occurs to PSII, in which P680 ϩ , the strongest biological oxidant, is generated and finally leads to the splitting of water to molecular oxygen, protons, and electrons. Under physiological conditions, an elaborate and well-orchestrated repair process repairs such damages, so that PSII can function optimally.Because PSII is under constant repair and biogenesis, elucidation of the details of the PSII assembly p...