Climate change has exerted a significant global impact in recent years, and extreme weather-related hazards and incidents have become the new normal. For Taiwan in particular, the corresponding increase in disaster risk threatens not only the environment but also the lives, safety, and property of people. This highlights the need to develop a methodology for mapping disaster risk under climate change and delineating those regions that are potentially high-risk areas requiring adaptation to a changing climate in the future. This study provides a framework of flood risk map assessment under the RCP8.5 scenario by using different spatial scales to integrate the projection climate data of high resolution, inundation potential maps, and indicator-based approach at the end of the 21st century in Taiwan. The reference period was 1979–2003, and the future projection period was 2075–2099. High-resolution climate data developed by dynamic downscaling of the MRI-JMA-AGCM model was used to assess extreme rainfall events. The flood risk maps were constructed using two different spatial scales: the township level and the 5 km × 5 km grid. As to hazard-vulnerability(H-V) maps, users can overlay maps of their choice—such as those for land use distribution, district planning, agricultural crop distribution, or industrial distribution. Mapping flood risk under climate change can support better informed decision-making and policy-making processes in planning and preparing to intervene and control flood risks. The elderly population distribution is applied as an exposure indicator in order to guide advance preparation of evacuation plans for high-risk areas. This study found that higher risk areas are distributed mainly in northern and southern parts of Taiwan and the hazard indicators significantly increase in the northern, north-eastern, and southern regions under the RCP8.5 scenario. Moreover, the near-riparian and coastal townships of central and southern Taiwan have higher vulnerability levels. Approximately 14% of townships have a higher risk level of flooding disaster and another 3% of townships will become higher risk. For higher-risk townships, adaptation measures or strategies are suggested to prioritize improving flood preparation and protecting people and property. Such a flood risk map can be a communication tool to effectively inform decision- makers, citizens, and stakeholders about the variability of flood risk under climate change. Such maps enable decision-makers and national spatial planners to compare the relative flood risk of individual townships countrywide in order to determine and prioritize risk adaptation areas for planning spatial development policies.