Abstract:The protists notably ciliates and testate amoebas in the conditions of modernized wastewater treatment plants "Hajdow" (Lublin, Poland) and the nitrogen removal efficiency were studied. Sampling took place every week during the period of August-September 2010. The total of 31 taxa of ciliates and 3 taxa of testate amoebas were identified. Most of the species were registered during the whole research period. Significant abundance reached the following species: Acineria uncinata, Aspidisca cicada, Aspidisca lynceus, Vorticella aquadulcis, Vorticella infusionum, Arcella vulgaris, Euglypha acanthophora and Pyxidicula operculata. In September increase in efficiency of nitrogen removal process was registered. The research shows that the increase of nitrogen reduction efficiency was accompanied by increase of ciliates quantity, mainly due to peritrichid ciliates.