Introduction of modern technologies and methods and quality analysis for the gemstone industry are the main strategic initiatives of the Small and Medium Development Authority (SMEDA) of Pakistan. In this regard, four natural gemstones Quartz, Pyrope-Almandine Garnet, Black tourmaline, and Amethyst brought from Hunza valley Pakistan were analyzed by state-of-the-art spectroscopic techniques including EDX, UV-VIS, and FTIR spectroscopy. EDX revealed the traces of Fe, Mg, and Ca in Pyrope-Almandine garnet, Mg and Fe in Black tourmaline, Au and Ca in Amethyst. UV-VIS data revealed the values of Urbach energies 520, 210, 460, and 430 meV, and the values of direct bandgap energies 5.14, 6.12, 5.54, 5.74 eV, respectively. The higher structural disorder due to the presence of Fe and other impurities in stones except Quartz was attributed to the higher values of Urbach energies and decrease in band gaps: FTIR data Fe-O and Si-O stretching vibration in Pyrope-Almandine garnet, Si-O bending vibrations and O-H stretching vibration in Quartz, Si-O-Si bending and stretching vibrations and C=O stretching vibrations in Black tourmaline, Ca-O stretching vibrations and Si-OH weak-vibrations in Amethyst. Photoluminescence results also showed useful information in investigating the properties of gemstones.