Assignment of new loci to river buffalo chromosomes confirms the nature of chromosomes 4 and 5

Abstract

Introduction Rapid development of the river buffalo physical map can be achieved by coupling its development to that of the cattle gene map. Syntenic conservation between cattle and buffalo has been demonstrated, mainly using somatic cell hybrids (de Hondt et al. 1991; El Nahas et al. 1993, 1996, 1998; de Hondt et al. 1997; El Nahta 1996; Oraby et al. 1977), and by using in situ hybridization as reviewed by Iannuzzi (1997). G‐ and R‐banding comparisons between cattle (2n = 60) and river buffalo (2n = 50) chromosomes have revealed a large number of banding homologies between the two species, both at early‐metaphase (Gupta and Ray‐Chaudhury 1978; Di Berardino et al. 1981) and prometaphase stages (Iannuzzi et al. 1990). Banding homology indicates that the five river buffalo biarmed pairs originate from centric fusion translocation between two of ten homologous cattle autosomes, which is very supportive of the hypothesis that both species have a common ancestor (Wurster and Benirschke 1968). Based on cytological analysis and banding homology between cattle and buffalo chromosomes, the five biarmed chromosomes of the river buffalo BBU1, BBU2, BBU3, BBU4, BBU5 were thought to originate from fusion of cattle chromosome (BTA) 1/25; 2/23; 8/19; 5/28; and 16/29 respectively (Iannuzzi et al. 1990; Report of the Committee for the Standardization of Banded Karyotopes of the River Buffalo 1994). However, the analysis of synteny between molecular markers assigned to different cattle syntenic groups demonstrated that BBU1 results from fusion of BTA 1 and 27 rather than 1 and 25 (El Nahas et al. 1977). This called for expanding the analysis of syntenic relationships between marker loci to confirm the nature of the other biarmed buffalo chromosomes. The purpose of this study is to test synteny between markers in buffalo and to confirm the nature of the biarmed buffalo chromosomes 4 and 5, using marker loci and somatic cell hybrids.

Construction of a river buffalo (Bubalus bubalis) whole‐genome radiation hybrid panel and preliminary RH mapping of chromosomes 3 and 10

“…The extensive use of buffalo in agriculture worldwide, and especially in developing countries, begs for genetic resources to evaluate and improve traits important to local and regional economies. Very few resources exist to study genomics of buffalo, besides rudimentary somatic cell maps (El Nahas et al. 1999) and cytogenetic maps (Iannuzzi et al.…”