“…The KEGG pathway analysis of astrocytes showed that this cluster is involved in Huntington’s disease, Parkinson’s disease, Alzheimer’s disease, retrograde nerve signaling, GABAergic synapses, and lysosomal pathways ( Figure 5E ), indicating that astrocyte reactivity is associated with neurological disorders. Moreover, the expression of reactivity marker genes of astrocytes, such as Id3 , Npc2 and Prdx6 28 , Alzheimer’s disease risk-related genes Ctsb , Ctsd , Ctsl , S100a6 , Itgab5 and Vsir 29 and interferon stimulated genes Gbp3 , Gbp2 , Irgm1 , Iigp1 , Igtp , Cxcl10 were all up-regulated in the astrocyte of brain 30–32 ( Figure 5F, Figure S9B ). All these data suggest that the bacteria are involved in alternations of brain homeostasis, by switching both microglia and astrocytes from quiescence to activation though bacterial infection-related pathways.…”