The influences of indenter shape on dislocation actives and stress distributions during nanoindentation were studied by using molecular dynamics (MD) simulation. The load-displacement curves, indentation-induced stress fields, and dislocation activities were analyzed by using rectangular, spherical, and Berkovich indenters on single crystal nickel. For the rectangular and spherical indenters, the load-displacement curves have a linear dependence, but the elastic stage produced by the spherical indenter does not last longer than that produced by the rectangular indenter. For a Berkovich indenter, there is almost no linear elastic regime, and an amorphous region appears directly below the indenter tip, which is related to the extremely singular stress field around the indenter tip. In three indenters cases, the prismatic dislocation loops are observed on the {111} planes, and there is a sudden increase in stress near the indenter for the Berkovich indenter. The stress distributions are smooth with no sudden irregularities at low-indentation depths; and the stress increases and a sudden irregularity appears with the increasing indentation depths for the rectangular and spherical indenters. Moreover, the rectangular indenter has the most complex dislocation activities and the spherical indenter is next, while very few dislocations occur in the Berkovich indenter case.