2021
DOI: 10.1039/d1cp02144c
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Automated reaction mechanisms and kinetics based transition state search process AMK-gau_xtb and its application to the substitution reaction of the nitroso group in 2,4,6-trinitrotoluene by hydroxide anion in the aqueous phase

Abstract: The automated reaction mechanisms and kinetics (AutoMeKin) program evolved from transition state search using chemical dynamics simulations (TSSCDS). It combines a series of empirical, semi-empirical and ab initio calculation methods...

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Cited by 5 publications
(9 citation statements)
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“…iii. As was found in Zhang's previous research on AMK-gau_xtb, 15,16 the BBFS method does not always accurately locate the initial TSs; however, the positioning accuracy of BBFS has been improved with the help of Quadratic Synchronous Transit 3 (QST3) 17,18 and GFN 2 -xTB. 19 Nevertheless, for a system with a complex chemical environment and that is severely affected by dynamics, AMK-gau_xtb cannot accurately yield the initial TSs.…”
Section: Introductionmentioning
confidence: 86%
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“…iii. As was found in Zhang's previous research on AMK-gau_xtb, 15,16 the BBFS method does not always accurately locate the initial TSs; however, the positioning accuracy of BBFS has been improved with the help of Quadratic Synchronous Transit 3 (QST3) 17,18 and GFN 2 -xTB. 19 Nevertheless, for a system with a complex chemical environment and that is severely affected by dynamics, AMK-gau_xtb cannot accurately yield the initial TSs.…”
Section: Introductionmentioning
confidence: 86%
“…Second, the NEB method is used to reconstruct the reaction path based on the reactants and products of the MD results, and the TSs are located via maximum energy point. Inspired by Zhang's previous study, 15 AMK_Mountain respectively extracts the n th configuration before the initial TS as the reactant, and the n ‐th configuration after the TS as the product. Next, the NEB‐TS 27 method is used to perform low‐level operations on these initial TSs.…”
Section: Methodsmentioning
confidence: 99%
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“…Under the guidance of this thought, thanks to the high-precision semiempirical method GFN n -xTB developed by Grimme, especially GFN 2 -xTB, qualitative MD and low-level operations have been rapidly improved in accuracy and speed. Furthermore, GFN 2 -xTB is also the basis for the successful development of the new processes AMK-gau_xtb and AMK_Mountain . Among them, AMK_Mountain based only on ORCA5.0 has been applied to the first step of the alkaline hydrolysis reaction of the NC monomer and has brought a new understanding of the reaction pathway to generate nitrate anions and nitrite anions.…”
Section: Introductionmentioning
confidence: 99%