Edited by F. Anne Stephenson-Site APP-cleaving enzyme 1 (BACE1), 3 a type I transmembrane aspartic protease, was identified as the -secretase that cleaves amyloid -protein precursor (APP) to generate neurotoxic amyloid  (A) (1-4). BACE1 cleaves APP at the peptide bond between Met 671 and Asp 672 (-site; sequence numbering refers to the APP770 isoform) (5, 6). This primary cleavage of APP generates the secreted form of the amino-terminal large fragment (sAPP) and the membrane-associated carboxyl-terminal fragment (CTF/C99) (reviewed in Ref. 7). Because CTF/C99 includes the complete amino acid sequence of the A region, and subsequent cleavage of CTF/C99 by ␥-secretase generates the A(1-XX) peptides (A1 indicates the position of Asp 672 ), the -site cleavage is referred to as amyloidogenic processing of APP (reviewed in Ref. 8). Alternatively, APP can also be cleaved by ␣-secretase (mainly ADAM10/17), at the peptide bond between Lys 687 and Leu 688 , generating sAPP␣ and CTF␣/C83 including the A(17-XX) region; accordingly, this cleavage is referred to as amyloidolytic processing of APP (9 -11). BACE1 also cleaves APP at another peptide bond between Tyr 681 and Gln 682 (Ј-site), resulting in generation of sAPPЈ and CTFЈ/C89 (12, 13). Cleavage of CTFЈ/C89 by ␥-secretase yields A(11-XX), which lacks the first 10 amino acids of the A domain. This Ј-site cleavage of APP is also thought to be amyloidolytic, because the structural analysis suggests that A(11-40) and A(11-42) are less toxic than A(1-40) and A(1-42) (14), and the A(11-42) showed reduced neurotoxicity compared with A(1-42) and A(3-42) in a study with transgenic fly (15), although the neurotoxicity of A(11-XX) in human brain is controversial (16).A is the major protein component of senile plaques observed in the brain of Alzheimer's disease (AD) subjects, and soluble A oligomer(s) are thought to impair synaptic functions prior to A deposition in the brain (17)(18)(19). Therefore, to understand AD pathogenesis and develop effective AD ther-