2011
DOI: 10.1128/aem.00128-11
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Bacteriophages LIMElight and LIMEzero of Pantoea agglomerans, Belonging to the “phiKMV-Like Viruses”

Abstract: Pantoea agglomerans is a common soil bacterium used in the biocontrol of fungi and bacteria but is also an opportunistic human pathogen. It has been described extensively in this context, but knowledge of bacteriophages infecting this species is limited. Bacteriophages LIMEzero and LIMElight of P. agglomerans are lytic phages, isolated from soil samples, belonging to the Podoviridae and are the first Pantoea phages of this family to be described. The double-stranded DNA ( Pantoea agglomerans bacteria are Gram-… Show more

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Cited by 50 publications
(44 citation statements)
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“…The largest study by Adrianenssens et al (2011) constructed three single gene product phylogenetic trees of many T7-related phages (including 24 that infect Enterobacteriaceae hosts) that were based on RNA polymerase, DNA polymerase and MCP. The RNA and DNA polymerase trees show relationships very similar to those from our whole genome dot plot analysis, with one branch being the T7 cluster, another branch being the SP6 cluster (phages SP6, ERA103, K1E and K1-5) and a third, more diverse branch harboring phages from the KP34 cluster as well as LIMEzero (no phages of the GAP227 or øKT clusters were analyzed).…”
Section: Resultsmentioning
confidence: 99%
“…The largest study by Adrianenssens et al (2011) constructed three single gene product phylogenetic trees of many T7-related phages (including 24 that infect Enterobacteriaceae hosts) that were based on RNA polymerase, DNA polymerase and MCP. The RNA and DNA polymerase trees show relationships very similar to those from our whole genome dot plot analysis, with one branch being the T7 cluster, another branch being the SP6 cluster (phages SP6, ERA103, K1E and K1-5) and a third, more diverse branch harboring phages from the KP34 cluster as well as LIMEzero (no phages of the GAP227 or øKT clusters were analyzed).…”
Section: Resultsmentioning
confidence: 99%
“…There is diversity within the tail fiber proteins of the phiKMVlike phages in terms of both sequence homology and components (46). In phiKMV-like phages, tail structural proteins are found immediately downstream of the internal virion proteins.…”
Section: Resultsmentioning
confidence: 99%
“…The Prado gene encoding single-subunit RNAP is located at the right end of the DNA metabolism gene cluster, a distinguishing characteristic of all reported phiKMV-like phages. However, it has been noted that the position of the DNA ligase gene can vary within phiKMV-like phages (46). In phiKMV, the DNA ligase is encoded at the beginning of the DNA metabolism genes, whereas in Cd1 and Salvo, the DNA ligase is encoded directly before the RNA polymerase (Fig.…”
Section: Resultsmentioning
confidence: 99%
“…These genes have been previously used as marker in several phylogenetic studies of the T4- and T7-like phages58596061. The phylogenetic tree was constructed with all phages currently annotated as Tevenvirinae and Autographivirinae subfamilies along with MP1 and MP2.…”
Section: Resultsmentioning
confidence: 99%