Positive-strand RNA [(؉)RNA] viruses invariably replicate their RNA genomes on modified intracellular membranes. In infected Drosophila cells, Flock House nodavirus (FHV) RNA replication complexes form on outer mitochondrial membranes inside ϳ50-nm, virus-induced spherular invaginations similar to RNA replication-linked spherules induced by many (؉)RNA viruses at various membranes. To better understand replication complex assembly, we studied the mechanisms of FHV spherule formation. FHV has two genomic RNAs; RNA1 encodes multifunctional RNA replication protein A and RNA interference suppressor protein B2, while RNA2 encodes the capsid proteins. Expressing genomic RNA1 without RNA2 induced mitochondrial spherules indistinguishable from those in FHV infection. RNA1 mutation showed that protein B2 was dispensable and that protein A was the only FHV protein required for spherule formation. However, expressing protein A alone only "zippered" together the surfaces of adjacent mitochondria, without inducing spherules. Thus, protein A is necessary but not sufficient for spherule formation. Coexpressing protein A plus a replication-competent FHV RNA template induced RNA replication in trans and membrane spherules. Moreover, spherules were not formed when replicatable FHV RNA templates were expressed with protein A bearing a single, polymerase-inactivating amino acid change or when wild-type protein A was expressed with a nonreplicatable FHV RNA template. Thus, unlike many (؉)RNA viruses, the membrane-bounded compartments in which FHV RNA replication occurs are not induced solely by viral protein(s) but require viral RNA synthesis. In addition to replication complex assembly, the results have implications for nodavirus interaction with cell RNA silencing pathways and other aspects of virus control.Eukaryotic positive-strand RNA [(ϩ)RNA] virus genome replication universally occurs on rearranged host intracellular membranes (1, 37, 49). Membrane rearrangements used by different viruses include, but are not limited to, membranous webs of vesicles (24, 56), double-membrane vesicles (41), and double-membrane layers (52). Among the most common virusinduced membrane rearrangements are 50-to 80-nm membrane invaginations or spherules which are associated with RNA replication by alphaviruses, bromoviruses, nodaviruses, flaviviruses, tymoviruses, tombusviruses, and other viruses (23,35,44,48,51,62).Such replication-associated membrane rearrangements are often induced by one or a few viral nonstructural proteins. The membranous web formed by hepatitis C virus (HCV) is induced by HCV protein NS4B (19). Double-membrane vesicles formed by the equine arterivirus are induced by the viral nsp2 and nsp3 proteins (55). Endoplasmic reticulum (ER) spherules formed by brome mosaic virus (BMV) are induced by BMV RNA replication protein 1a (51).To better understand the mechanisms of (ϩ)RNA virus replication complex formation, including membrane rearrangement, we examined Flock House virus (FHV) spherule formation. FHV belongs to the family Nodav...