A 14 mo trawl survey was conducted at 8 study sites in Biscayne Bay, Florida, USA, to compare the species composition and structure of juvenile fish assemblages found near the mouths of freshwater flood control canals with those in similar areas with relatively stable salinity regimes. Water temperature, salinity, dissolved oxygen and depth measurements were recorded during fish sampling and bottom vcgctation was also quantified. The survey yielded a total of 38 134 individuals from 95 taxa. Fish species composition was similar among sites, but more species were collected from stableversus variable-salinity areas Mean fish abundance dnd the mean abundances of Euc~nostonius gula. Lagodon rhornboides, Opsanus beta and Lutjanus grlseus shared a general pattern of increase from north to s o~.~t h , with highest values occurring at one or more of the canal-influenced sites In contrast, mean specles nchness and the mean abundances of Lucanlaparva, Haenlirlon sciurw, H. plurnleri, and H. parra were signif~cantly greater at stable-salinity sltes than at variable-salinity sites Freshwdter challenge experiments \yere then condu.ctcd on each of the fishes above, as well as on 2 relatively uncommon species, Cynoscion nebulosus and Cypnnodon vadegatus. The mortality of groups exposed to a single, rapid, freshwater pulse (i.e. salinity was changed from approximately 32 ppt to 0 to 32 ppt over 2 h ) was compared with that of controls. Of the 8 fishes that dominated the nearshore habitats of Biscaync Bay, 5 exhibited no mortality and L. rhornboldrs, L. parva, and H. plurnleri exhibited 12.5, 50 and loo'% mortality rates, respectively. Mortality was 10Oo0 for the relatively uncommon C. nebulos~ls and C. variegatus. Results suggest that the differential osmoregulatory abilities of the species tested may underlie some, but not all, of the structural differences observed between fish assemblages from stable-sa1i:nity habitats versus those ddjacent to freshwater canals.