Most industrial enzymes are hydrolases, such as glycosidases and esterases. However, oxidoreductases have an unexploited potential for substituting harsh (and scarcely selective) chemical processes. A group of basidiomycetes are the only organisms degrading the aromatic lignin polymer, enabling the subsequent use of plant polysaccharides. Therefore, these fungi and their ligninolytic peroxidases are the biocatalysts of choice for industrial delignifi cation and oxidative biotransformations of aromatic and other organic compounds. The latter also include oxygenation reactions, which are catalyzed with high regio/stereo selectivity by fungal peroxygenases. In search for novel and more robust peroxidases/peroxygenases, basidiomycetes from unexplored habitats were screened, and hundreds of genes identifi ed in basidiomycete genomes (in collaboration with the DOE JGI). The most interesting genes were heterologously expressed, and the corresponding enzymes structurally-functionally characterized. The information obtained enabled us to improve the enzyme operational and catalytic properties by directed mutagenesis. However, the structural-functional relationships explaining some desirable properties are not established yet and, therefore, their introduction was addressed by 'non-rational' directed evolution. Then, over 100 oxidative biotransformations were analyzed. Among them, it is noteworthy to mention the regio/stereo selective hydroxylation of long/short-chain alkanes (a chemically challenging reaction), epoxidation of alkenes, and production of hydroxy-fatty acids. Concerning aromatic oxygenations, the regioselective hydroxylation of fl avonoids, and stereoselective hydroxylation/epoxidation of alkyl/alkenyl-benzenes were among the most remarkable reactions, together with enzymatic hydroxylation of benzene (as an alternative for harsh chemical process). Finally, peroxidases and peroxygenases also showed a potential as delignifi cation biocatalysts and in the decolorization of contaminant dyes from textile industries.
Screening of fungal cultures and genomes for enzymes of interestTh e search for new peroxidases/peroxygenases of industrial interest included culture and genomic screenings combined with transcriptomic, metatranscriptomic and related studies.
Enzymatic screening and secretomic analysisTh e screening of fungal cultures included (i) the search for new extracellular enzymatic activities in over 100 basidiomycete strains from unique and extreme environments and (ii) the identifi cation of specifi c heme peroxidases of interest in secretomes of previously isolated basidiomycetes. For isolation and growth of the new fungal strains, culture media with complex carbon and nitrogen sources were used to satisfy the special nutritional requirements of many of them. Th e secretomic analyses were performed by sequencing tryptic peptides using nano-liquid chromatography coupled with tandem mass spectrometry (nLC-MS/MS).