Seaweed has long been an important kitchen ingredient and a functional food material. Microalgae have attracted the same attention as seaweed from food, pharmaceutical and cosmetic companies because several algae contain unique functional materials. Industry application of algae requires the selection of useful algal species, evaluation of their features and monitoring of their quality in culture. Taking Chlorella for example, this chapter presents a method using flow cytometry (FCM) to assess not only the number of algae but also algal quality. First, Chlorella was cultured in media containing eluate from steel slag as an experimental factor and trace metals. After the treatment of algae with eluate, the number and physiological features of algae were evaluated, respectively, using hemocytometry and FCM. Results show that eluate from slag induced neither lethality nor growth inhibition. Coupled with hemocytometry, FCM was used to estimate vigorous and aberrant algal status. Consequently, the eluate did not give rise to algae stresses. Interestingly, the addition of slag eluate increased the amounts of the carbonate species. The increase in the carbonate species actually triggered the potential increase in aqueous CO 2 for photosynthesis, eventually inducing algal proliferation. These analyses can support evaluation of algal features and maintenance of their quality for industry application.