The importance of high transfection efficiency has been emphasized in many studies investigating methods to improve gene delivery. Accordingly, non-viral transfection agents are widely used as transfection vectors to condense oligonucleotides, DNA, RNA, siRNA, deliver into the cell, and release the cargo. Polyethyleneimine (PEI) is one of the most popular non-viral transfection agents. However, the challenge between high transfection efficiency and toxicity of the polymers is not totally resolved. The delivery of necessary drugs and genes for patients and their transport under safe conditions require carefully designed and controlled delivery systems and constitute a critical stage of patients' treatment. Compact systems are considered as the strongest candidate for the preparation and delivery of drugs and genes under leak free and safe conditions because of their low energy consumption, low waste disposal, parallel and fast processing capabilities, removal of human factor, high mixing capabilities, enhanced safety, and low amount of reagents. Motivated by this need in the literature, a platform for gene delivery via magnetic actuation of nanoparticles was developed in this study. The use of PEI-SPION (Super paramagnetic ironoxide nanoparticles) as transfection agents in in vitro studies was investigated with the effect of varying magnetic fields provided by a special magnetic system design, which was used as magnetic actuator offering different magnet's turn speeds and directions in the system. Results obtained from magnetic actuator systems were compared to the experiments without actuation and significant enhancement was observed in the transfection efficacies.