Efforts to deduce the evolutionary significance of sexual reproduction from the taxonomic and ecological distributions of asexuals rely on the presumption that reversions of asexual taxa to sexual reproduction are rare. There is growing evidence, however, that reversions may be likely as long as asexuals are diploid, and some sexual populations persist. However, few systems have been studied in sufficient detail to provide insight into the nature of interactions between the sexual and asexual components of a single taxon. The cladoceran crustaceans Daphnia pulex and D. puilcaria both show variation in breeding system with some populations reproducing by cyclic and others by obligate parthenogenesis. The present study used allozymic analysis to characterize the breeding systems of both species across Canada. Although F1 hybrids were prevalent between the species and invariably reproduced by obligate parthenogenesis, each parent species showed regional variation in its breeding system. D. pulex reproduces by obligate parthenogenesis in eastern Canada but switches to cyclic parthenogenesis in the west with an abrupt transition coincident with the forest/prairie ecotone. D. pulicaria shows a divergent pattern, with populations on the priaries reproducing by obligate parthenogenesis, while those in eastern Canada and the far west are cyclic parthenogens. The results make clear that breeding systems in both taxa tend to be uniform over large areas. The discordance in breeding system employed by each species at specific sites suggests that the patterns of breeding system variation are not linked to environmental factors, but are instead a consequence of the interplay between historical factors, such as dispersion patterns from glacial ref ugia and the sites of origin of mutations promoting the transition to asexuality.