Background
Ralstonia solanacearum
causes bacterial wilt of
Pogostemon cablin
which is an important aromatic herb and also the main materials of COVID-19 therapeutic traditional drugs. However, we are lacking the information on the genomic sequences of
R. solanacearum
isolated from
P. cablin
.
Objective
The acquisition and analysis of this whole-genome sequence of the
P. cablin
bacterial wilt pathogen.
Methods
An
R. solanacearum
strain, named SY1, was isolated from infected
P. cablin
plants, and the complete genome sequence was sequenced and analyzed.
Results
The SY1 strain contains a 3.70-Mb chromosome and a 2.18-Mb megaplasmid, with GC contents of 67.57% and 67.41%, respectively. A total of 3308 predicted genes were located on the chromosome and 1657 genes were located in the megaplasmid. SY1 strain has 273 unique genes compared with five representative
R. solanacearum
strains, and these genes were enriched in the plant–pathogen interaction pathway. SY1 possessed a higher syntenic relationship with phylotype I strains, and the arsenal of type III effectors predicted in SY1 were also more closely related to those of phylotype I strains. SY1 contained 14 and 5 genomic islands in its chromosome and megaplasmid, respectively, and two prophage sequences in its chromosome. In addition, 215 and 130 genes were annotated as carbohydrate-active enzymes and antibiotic resistance genes, respectively.
Conclusion
This is the first genome-scale assembly and annotation for
R. solanacearum
which isolated from infected
P. cablin
plants. The arsenal of virulence and antibiotic resistance may as the determinants in SY1 for infection of
P. cablin
plants.
Supplementary Information
The online version contains supplementary material available at 10.1007/s13258-022-01270-9.