GTP cyclohydrolase I feedback regulatory protein (GFRP) mediates feedback inhibition of GTP cyclohydrolase I activity by tetrahydrobiopterin and also mediates the stimulatory effect of phenylalanine on the enzyme activity. To characterize the molecular structure of GFRP, we have purified it from rat liver using an efficient step of affinity chromatography and isolated cDNA clones, based on partial amino acid sequences of peptides derived from purified GFRP. Comparison between the amino acid sequence deduced from the cDNA and the N-terminal amino acid sequence of purified GFRP showed that the mature form of GFRP consists of 83 amino acid residues with a calculated M r of 9,542. The isolated GFRP cDNA was expressed in Escherichia coli as a fusion protein with six consecutive histidine residues at its N terminus. The fusion protein was affinitypurified and digested with thrombin to remove the histidine tag. The resulting recombinant GFRP showed kinetic properties similar to those of GFRP purified from rat liver. Cross-linking experiments using dimethyl suberimidate indicated that GFRP was a pentamer of 52 kDa. Sedimentation equilibrium measurements confirmed the pentameric structure of GFRP by giving an average M r of 49,734, which is 5 times the calculated molecular weight of the recombinant GFRP polypeptide. Based on the pentameric structure of GFRP, we have proposed a model for the quaternary structure of GFRP and GTP cyclohydrolase I complexes. 6,7, 1 is an essential cofactor for aromatic amino-acid hydroxylases and nitric-oxide synthases (1, 2). The intracellular level of BH 4 is subsaturating for these enzyme reactions and thus is thought to be an important regulator of the activities of these enzymes. BH 4 is synthesized from GTP by a pathway composed of four enzyme reactions (1). Most important for regulation of BH 4 biosynthesis is GTP cyclohydrolase I (EC 3.5.4.16), which catalyzes the first and rate-limiting step of the conversion of GTP to dihydroneopterin triphosphate. GTP cyclohydrolase I is present in many organisms, ranging from bacteria to animal. In bacteria, this enzyme functions as the first enzyme in the biosynthesis of folic acid and not of BH 4 (1). Rat GTP cyclohydrolase I is composed of multiple identical subunits and shows positive cooperativity against GTP (3, 4).We have recently reported the identification of a new regulatory protein (GFRP) which mediates the feedback inhibition of GTP cyclohydrolase I by the end product of this pathway, BH 4 (5). GFRP and BH 4 inhibit the enzyme activity of GTP cyclohydrolase I by decreasing its maximum velocity while having little effect on the affinity of GTP, indicating noncompetitive inhibition. GFRP exerts its inhibitory effect on GTP cyclohydrolase I by forming a complex with GTP cyclohydrolase I in the presence of BH 4 and GTP. Formation of the complex between the two proteins is reversible, depending on the presence of BH 4 and GTP. Furthermore, the inhibition of GTP cyclohydrolase I by GFRP and BH 4 is specifically reversed by L-phenylalanine. ...