A purified chloroplast fraction was prepared from caps of the giant unicellular green alga Acetabularia mediterranea (strain 17). High molecular weight DNA obtained from these chloroplasts contains at least five copies of a 10-kilobase-pair (kbp) sequence tandemly arranged. This unique sequence is present in DNA from chloroplasts of all stages of the life cycle examined. A chloroplast rDNA clone from mustard hybridized with some restriction fragments from Acetabularia chloroplast DNA but not with the repeated sequence. An 8-kbp EcoRI-.Pst I fragment of the repeated sequence was cloned into pBR322 and used as a hybridization probe. No homology was found between the cloned 8-kbp sequence and chloroplast DNA from related species Acetabularia crenulata or chloroplast DNA from spinach.Chloroplast genomes are usually considered to have a conservative structure and to be circular with a contour length of 37-46 ,um in higher plants. A One of the most ancient families of green algae, Dacycladaceae, which is known by numerous fossil species, has a number of present day representatives of which Acetabularia is the best known. Early studies with Acetabularia have shown that DNA from chloroplast fractions contains long lengths of DNA when viewed in the electron microscope (7). The kinetic complexity of this DNA resembles that of Escherichia coli rather than that of Chlamydomonas (8). With this information we have started a study to further characterize the chloroplast genome of Acetabularia.In this paper we describe experiments that reveal that the chloroplast genome in a strain of Acetabularia mediterranea contains tandemly repeated sequences that are stable during the life cycle and that are not homologous to heterologous probes for ribosomal RNA genes.
MATERIALS AND METHODS Preparation of Chloroplasts. A. mediterranea was grown inMuller's medium as described (for references, see ref. 9). Cells of three different stages, 1 cm long, 3.5 cm long (i.e., just prior to cap formation), and fully developed caps (9) were studied.Caps from A. mediterranea cells were harvested prior to the formation of secondary nuclei. Five-thousand caps ('100 g) were homogenized in a blender fitted with razor blades on a vertical shaft in 1 liter of ice-cold buffer A containing 0.6 M sorbitol, 0.1 M 2-{[tris (hydroxymethyl) methyl]amino}ethanesulfonic acid (Tes; pH 7.8), 0.005 M disodium EDTA, and 0.002 M 2,3-dihydroxy-1,4-dithiobutane.After five 3-sec bursts in the blender, the homogenate was filtered through two layers of Miracloth (Calbiochem) and 1 layer of 10-gm nylon cloth. Chloroplasts were pelleted by centrifugation at 3500 rpm in a GSA rotor (Sorvall) for 4 min at 40C. The crude chloroplast pellets were suspended in 400 ml of buffer B containing 0.6 M sorbitol, 0.01 M Tes (pH 7.8), 0.005 M EDTA, and 0.002 M 2,3-dihydroxy-1, 4-dithiobutane. After a minimum of 1 hr at 0C to reduce aggregation, the chloroplast suspension was filtered slowly through 5-,&m Nuclepore polycarbonate membranes with use of a syringe. Each 50-mm filter c...