Waterfowl managers lack information regarding factors that may be reducing the positive response of waterfowl body condition to habitat improvements. Protozoan blood parasites (i.e., hematozoa) are commonly found in birds and have been related to reduced body mass, wing length, and body condition. We studied relationships between 12 measures of hematozoa infection and body mass, wing length, and body mass divided by wing length (i. After accounting for variation due to species, age-sex cohort, Central Valley region, and month, wing length, body mass, and body condition index were found to be negatively related to infection by Leucocytozoon and by ''any hematozoa'' but not related to infection by only Plasmodium or Haemoproteus, or coinfections of greater than one genus or parasite haplotype (albeit few ducks had Plasmodium or Haemoproteus infection or coinfections). Evidence of a negative relationship with infection was stronger for body mass and body condition index than for wing length and indicated that the relationships varied among species, age-sex cohorts, regions, and months. Compared with uninfected ducks, hematozoa-infected duck body mass, wing length, and body condition index was À1.63% (85% CI ¼À2.79% to À0.47%), À0.12% (À0.41% to 0.17%), and À1.38% (À2.49% to À0.26%), respectively. Although seemingly small, the À1.63% difference in body mass represents a large percentage (e.g., 38% for northern pintail) of the observed increase in wintering duck body mass associated with Central Valley habitat improvements. Because infection prevalence and relationship to body condition might change over time because of climate or other factors, tracking hematozoa infection prevalence might be important to inform and accurately assess the effect of conservation programs designed to improve waterfowl body condition.