The restoration of historic buildings and structures involves a wide range of scientific and technical fields. The grouting process is among an array of rehabilitation and preservation interventions and aims to homogenize the structure after the implementation of strengthening measures. The process can provide important information regarding the state of preservation of the examined structure and correlate the progress of the process with the pathology of the monument. To achieve this, the analysis of typical raw grouting data is progressively fused with additional information from the diagnostic studies, non-destructive testing, geospatial information, and from the calculation and analysis of grouting indices. The restoration project of the Katholikon of the Monastery of Panagia Varnakova in Fokida, Greece was selected as the case study, due to its large scale and the severe earthquake damage it has sustained, which has necessitated comprehensive strengthening interventions and extensive grouting. The implementation of an integrated methodological approach validated the enhanced level of co-analysis, revealing information that is not readily deduced from a typical approach. Selected sub-areas of the Katholikon are presented, demonstrating how the observed pathology can be correlated with the results of the grouting process, while incorporating 3D data, and findings from structural and non-destructive analyses.