The study focused on the verification of the preferential site-specific concept hypothesizing, that mineral elements could be playing an initiating role in the biological speciation within Aneura pinguis cryptic species. A. pinguis species A and soil materials were collected from three ecological sites of Poland. They underwent genetic (Aneura pinguis) and chemical analyses (soil materials) for pH, total and water soluble (active) forms of Ca, Mg, K, Na fractions. Data revealed trends in the site preference of three genetic lineages (A1, A2 and A3) of A. pinguis cryptic species A. Lineage adaptability index Ca/(Mg + K + Na) reflecting the dynamic character of site pH implied, that lineages A1 and A2 were both calciphilous. The A3 lineages were intrinsically acidophilous and this characteristics was also observed at some A1 lineages. Site concentrations of Ca and in some cases Mg too were crucial in shaping pH, but this process could have been controlled by each mineral element, individually. Calciphilous or acidophilous A. pinguis species may be “remotely” attracted by high or low Ca (or Mg) concentrations, for alkalinity or acidity emergence, respectively. Mineral richness at investigated ecological sites has possibly initiated opportunistic and specific site colonisation by A. pinguis lineages.